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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12377 and 12378 are separated by 616 nucleotides
12378 and 12379 are separated by 384 nucleotides
12379 and 12380 are separated by 224 nucleotides
12380 and 12381 are separated by 913 nucleotides
mRNA_4009: 12377 - K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1, at 1,140,211 to 1,141,922
12377
mRNA_4010: 12378 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1,142,539 to 1,145,554
12378
mRNA_4011: 12379 - HMMPfam-Retinoic acid induced 16-like protein-PF10257, at 1,145,939 to 1,149,704
12379
mRNA_4012: 12380 - KOG2370 Cactin, at 1,149,929 to 1,152,487
12380
mRNA_4013: 12381 - HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317, at 1,153,401 to 1,154,671
12381
Group
Condition
mRNA
_4009
mRNA
_4010
mRNA
_4011
mRNA
_4012
mRNA
_4013
12377
12378
12379
12380
12381
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.1
-0.1
N.D.
-1.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.3
+0.2
N.D.
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.9
-0.2
+0.2
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+0.5
-0.3
N.D.
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-1.0
+0.5
+0.1
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-1.1
+0.2
+0.4
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.3
+0.1
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-0.0
N.D.
+0.2
auxotrophy
YNB Glucose
+0.4
-0.3
+0.1
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.1
-0.5
N.D.
+1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.2
-0.4
N.D.
+1.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.8
+0.3
N.D.
-0.4
auxotrophy
Dropout Complete
+0.3
-0.5
-0.0
N.D.
+0.6
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.2
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.1
-0.2
-0.2
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.0
+0.1
+0.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.1
-0.1
+0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
-0.1
+0.2
N.D.
+0.0
growth on ypd
YPD
+1.0
+0.0
+0.4
N.D.
+1.8
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