Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12377 and 12378 are separated by 616 nucleotides12378 and 12379 are separated by 384 nucleotides12379 and 12380 are separated by 224 nucleotides12380 and 12381 are separated by 913 nucleotides mRNA_4009: 12377 - K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1, at 1,140,211 to 1,141,922 12377 mRNA_4010: 12378 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1,142,539 to 1,145,554 12378 mRNA_4011: 12379 - HMMPfam-Retinoic acid induced 16-like protein-PF10257, at 1,145,939 to 1,149,704 12379 mRNA_4012: 12380 - KOG2370 Cactin, at 1,149,929 to 1,152,487 12380 mRNA_4013: 12381 - HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317, at 1,153,401 to 1,154,671 12381
Group Condition mRNA_4009 mRNA_4010 mRNA_4011 mRNA_4012 mRNA_4013
12377 12378 12379 12380 12381
facs on lipid accumulation Sorted No BODIPY Gate -0.3 +0.1 -0.1 N.D. -1.8
facs on lipid accumulation Sorted Low BODIPY Gate -0.9 -0.3 +0.2 N.D. -0.7
ypd buoyancy 40 hrs High Buoyancy -0.9 -0.2 +0.2 N.D. -0.5
facs on lipid accumulation Sorted High BODIPY Gate -0.7 +0.5 -0.3 N.D. -0.7
ypd buoyancy 40 hrs Low Buoyancy -1.0 +0.5 +0.1 N.D. -0.5
ypd buoyancy 40 hrs Median Buoyancy -1.1 +0.2 +0.4 N.D. -0.1
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.2 -0.1 N.D. -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.1 -0.1 N.D. -0.1
auxotrophy YNB Glucose 75mM Arginine +0.5 -0.3 +0.1 N.D. -0.2
growth on oleic acid YNB Oleic Acid -0.0 -0.1 -0.0 N.D. +0.2
auxotrophy YNB Glucose +0.4 -0.3 +0.1 N.D. -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.5 -0.1 -0.5 N.D. +1.4
growth on ricinoleic acid YNB Ricinoleic Acid -0.7 +0.2 -0.4 N.D. +1.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 +0.8 +0.3 N.D. -0.4
auxotrophy Dropout Complete +0.3 -0.5 -0.0 N.D. +0.6
growth on ricinoleic acid YNB Glucose +0.1 -0.1 -0.2 N.D. +0.7
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +1.1 -0.2 -0.2 N.D. -0.1
growth on oleic acid YNB Glucose +0.0 +0.1 +0.1 N.D. +0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy +1.1 -0.1 +0.1 N.D. -0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.8 -0.1 +0.2 N.D. +0.0
growth on ypd YPD +1.0 +0.0 +0.4 N.D. +1.8
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