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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12380 and 12381 are separated by 913 nucleotides
12381 and 12382 are separated by 228 nucleotides
12382 and 12383 are separated by 162 nucleotides
12383 and 12384 are separated by 39 nucleotides
mRNA_4012: 12380 - KOG2370 Cactin, at 1,149,929 to 1,152,487
12380
mRNA_4013: 12381 - HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317, at 1,153,401 to 1,154,671
12381
mRNA_4014: 12382 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 1,154,900 to 1,159,801
12382
mRNA_4015: 12383 - K04512 DAAM dishevelled associated activator of morphogenesis, at 1,159,964 to 1,166,346
12383
mRNA_4016: 12384 - K01250 rihA pyrimidine-specific ribonucleoside hydrolase, at 1,166,386 to 1,167,803
12384
Group
Condition
mRNA
_4012
mRNA
_4013
mRNA
_4014
mRNA
_4015
mRNA
_4016
12380
12381
12382
12383
12384
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.8
+0.2
+0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.7
+0.2
+0.0
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.7
+0.3
+0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.5
+0.0
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.5
+0.0
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.1
-0.2
+0.0
auxotrophy
YNB Glucose
N.D.
-0.0
+0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.1
-0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.0
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
+0.0
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.3
-0.0
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.4
+0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
+0.0
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
+0.6
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.4
-0.0
+0.3
auxotrophy
Dropout Complete
N.D.
+0.6
+0.2
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.7
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+1.2
+0.2
-0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+1.4
-0.0
-0.1
+0.3
growth on ypd
YPD
N.D.
+1.8
+0.2
-0.0
-0.3
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