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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12382 and 12383 are separated by 162 nucleotides
12383 and 12384 are separated by 39 nucleotides
12384 and 12385 are separated by 456 nucleotides
12385 and 12386 are separated by 228 nucleotides
mRNA_4014: 12382 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 1,154,900 to 1,159,801
12382
mRNA_4015: 12383 - K04512 DAAM dishevelled associated activator of morphogenesis, at 1,159,964 to 1,166,346
12383
mRNA_4016: 12384 - K01250 rihA pyrimidine-specific ribonucleoside hydrolase, at 1,166,386 to 1,167,803
12384
mRNA_4017: 12385 - K13333 PLB lysophospholipase, at 1,168,260 to 1,170,390
12385
mRNA_4018: 12386 - K09500 CCT8 T-complex protein 1 subunit theta, at 1,170,619 to 1,173,012
12386
Group
Condition
mRNA
_4014
mRNA
_4015
mRNA
_4016
mRNA
_4017
mRNA
_4018
12382
12383
12384
12385
12386
growth on oleic acid
YNB Glucose
+0.1
-0.2
+0.1
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.1
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.1
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.0
-0.3
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.1
+0.3
-0.5
N.D.
auxotrophy
YNB Glucose
+0.1
-0.1
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
-0.3
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
+0.0
+0.1
N.D.
auxotrophy
Dropout Complete
+0.2
-0.0
-0.1
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
+0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
+0.3
+0.1
N.D.
growth on ypd
YPD
+0.2
-0.0
-0.3
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
+0.2
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
+0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.0
+0.3
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.0
-0.0
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.0
+0.2
-0.0
N.D.
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