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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12386 and 12387 are separated by 243 nucleotides
12387 and 12388 are separated by 540 nucleotides
12388 and 12389 are separated by 351 nucleotides
12389 and 12390 are separated by 31 nucleotides
mRNA_4018: 12386 - K09500 CCT8 T-complex protein 1 subunit theta, at 1,170,619 to 1,173,012
12386
mRNA_4019: 12387 - K15116 SLC25A33_36, RIM2 solute carrier family 25, member 33/36, at 1,173,256 to 1,174,830
12387
mRNA_4020: 12388 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,175,371 to 1,177,863
12388
mRNA_4021: 12389 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,178,215 to 1,180,562
12389
mRNA_4022: 12390 - KOG2661 Peptidase family M48, at 1,180,594 to 1,181,890
12390
Group
Condition
mRNA
_4018
mRNA
_4019
mRNA
_4020
mRNA
_4021
mRNA
_4022
12386
12387
12388
12389
12390
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
-0.0
-2.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
-0.1
-1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.1
-1.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
+0.2
-1.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.1
-1.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.3
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.3
-0.1
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.0
-0.2
-0.4
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
+0.1
-0.8
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
+0.0
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.2
+0.1
-0.2
auxotrophy
Dropout Complete
N.D.
N.D.
+0.1
-0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.0
+0.0
+0.0
growth on ypd
YPD
N.D.
N.D.
+0.1
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.0
-0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
-0.1
+0.2
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.4
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.2
-0.3
+1.0
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