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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12388 and 12389 are separated by 351 nucleotides
12389 and 12390 are separated by 31 nucleotides
12390 and 12391 are separated by 165 nucleotides
12391 and 12392 are separated by 124 nucleotides
mRNA_4020: 12388 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,175,371 to 1,177,863
12388
mRNA_4021: 12389 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,178,215 to 1,180,562
12389
mRNA_4022: 12390 - KOG2661 Peptidase family M48, at 1,180,594 to 1,181,890
12390
mRNA_4023: 12391 - K01061 E3.1.1.45 carboxymethylenebutenolidase, at 1,182,056 to 1,183,388
12391
mRNA_4024: 12392 - HMMPfam-Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)-PF10453,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356, at 1,183,513 to 1,185,147
12392
Group
Condition
mRNA
_4020
mRNA
_4021
mRNA
_4022
mRNA
_4023
mRNA
_4024
12388
12389
12390
12391
12392
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
-2.2
-0.5
N.D.
auxotrophy
Dropout Complete
+0.1
-0.2
+0.0
-1.5
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.2
-0.3
-0.6
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-1.0
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
-1.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
-1.0
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.2
-1.5
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.2
-0.4
-0.4
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
-0.9
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
+0.2
-1.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.8
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.1
-0.2
-0.4
N.D.
auxotrophy
YNB Glucose
-0.1
+0.2
+0.2
-1.0
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.5
-0.1
N.D.
growth on ypd
YPD
+0.1
-0.0
+0.0
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
+0.1
-0.6
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.0
-0.7
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
+0.2
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.0
+0.0
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.0
+0.1
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.3
+1.0
+0.8
N.D.
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