Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
12389 and 12390 are separated by 31 nucleotides
12390 and 12391 are separated by 165 nucleotides
12391 and 12392 are separated by 124 nucleotides
12392 and 12393 are separated by 761 nucleotides
mRNA_4021: 12389 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,178,215 to 1,180,562
12389
mRNA_4022: 12390 - KOG2661 Peptidase family M48, at 1,180,594 to 1,181,890
12390
mRNA_4023: 12391 - K01061 E3.1.1.45 carboxymethylenebutenolidase, at 1,182,056 to 1,183,388
12391
mRNA_4024: 12392 - HMMPfam-Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)-PF10453,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356, at 1,183,513 to 1,185,147
12392
mRNA_4025: 12393 - K15634 gpmB probable phosphoglycerate mutase, at 1,185,909 to 1,186,748
12393
Group
Condition
mRNA
_4021
mRNA
_4022
mRNA
_4023
mRNA
_4024
mRNA
_4025
12389
12390
12391
12392
12393
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-2.2
-0.5
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
-0.3
-0.6
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
-0.9
-0.2
N.D.
-0.3
auxotrophy
Dropout Complete
-0.2
+0.0
-1.5
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-1.0
-0.3
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-1.5
-0.0
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.8
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.4
-0.4
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-1.0
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
-0.4
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.1
-0.5
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose
+0.2
+0.2
-1.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-1.1
-0.1
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-0.6
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-1.0
-0.1
N.D.
+0.5
growth on ypd
YPD
-0.0
+0.0
-0.7
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.7
+0.3
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.0
+0.4
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
+0.3
N.D.
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+1.0
+0.8
N.D.
+0.1
remove
mRNA_4021
plot
remove
mRNA_4022
plot
remove
mRNA_4023
remove
mRNA_4024
plot
remove
mRNA_4025
plot