Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12390 and 12391 are separated by 165 nucleotides12391 and 12392 are separated by 124 nucleotides12392 and 12393 are separated by 761 nucleotides12393 and 12394 are separated by 138 nucleotides mRNA_4022: 12390 - KOG2661 Peptidase family M48, at 1,180,594 to 1,181,890 12390 mRNA_4023: 12391 - K01061 E3.1.1.45 carboxymethylenebutenolidase, at 1,182,056 to 1,183,388 12391 mRNA_4024: 12392 - HMMPfam-Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)-PF10453,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356, at 1,183,513 to 1,185,147 12392 mRNA_4025: 12393 - K15634 gpmB probable phosphoglycerate mutase, at 1,185,909 to 1,186,748 12393 mRNA_4026: 12394 - HMMPfam-Cyclin-PF08613, at 1,186,887 to 1,188,212 12394
Group Condition mRNA_4022 mRNA_4023 mRNA_4024 mRNA_4025 mRNA_4026
12390 12391 12392 12393 12394
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -2.2 -0.5 N.D. +0.3 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -1.5 -0.0 N.D. +0.0 N.D.
growth on oleic acid YNB Oleic Acid -0.9 -0.2 N.D. -0.3 N.D.
growth on ricinoleic acid YNB Glucose -0.3 -0.6 N.D. -0.4 N.D.
ypd buoyancy 40 hrs Low Buoyancy -1.0 -0.3 N.D. +0.1 N.D.
auxotrophy Dropout Complete +0.0 -1.5 N.D. +0.2 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.8 -0.2 N.D. -0.1 N.D.
auxotrophy YNB Glucose +0.2 -1.0 N.D. -0.2 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.4 N.D. -0.3 N.D.
auxotrophy YNB Glucose 75mM Methionine +0.2 -1.0 N.D. -0.1 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 -0.4 N.D. +0.0 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -1.1 -0.1 N.D. +0.5 N.D.
growth on oleic acid YNB Glucose -0.5 -0.1 N.D. -0.1 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.1 -0.6 N.D. -0.1 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -1.0 -0.1 N.D. +0.5 N.D.
growth on ypd YPD +0.0 -0.7 N.D. +0.2 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.7 +0.3 N.D. +0.2 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 +0.2 N.D. -0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.0 +0.4 N.D. -0.1 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 +0.3 N.D. +0.5 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +1.0 +0.8 N.D. +0.1 N.D.
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