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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12398 and 12399 are separated by 466 nucleotides
12399 and 12400 are separated by 2682 nucleotides
12400 and 12401 are separated by 269 nucleotides
12401 and 12402 are separated by 1750 nucleotides
mRNA_4030: 12398 - Hypothetical Protein, at 1,193,422 to 1,193,864
12398
mRNA_4031: 12399 - K08726 EPHX2 soluble epoxide hydrolase / lipid-phosphate phosphatase, at 1,194,331 to 1,195,759
12399
mRNA_4032: 12400 - Hypothetical Protein, at 1,198,442 to 1,200,513
12400
mRNA_4033: 12401 - K17675 SUPV3L1, SUV3 ATP-dependent RNA helicase SUPV3L1/SUV3, at 1,200,783 to 1,202,735
12401
mRNA_4034: 12402 - K13181 DDX27, DRS1 ATP-dependent RNA helicase DDX27, at 1,204,486 to 1,207,026
12402
Group
Condition
mRNA
_4030
mRNA
_4031
mRNA
_4032
mRNA
_4033
mRNA
_4034
12398
12399
12400
12401
12402
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.7
-1.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.3
-0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
N.D.
+0.1
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose
N.D.
+0.3
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.3
N.D.
N.D.
growth on ypd
YPD
N.D.
+0.0
+0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.4
N.D.
N.D.
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