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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12403 and 12404 are separated by 140 nucleotides
12404 and 12405 are separated by 212 nucleotides
12405 and 12406 are separated by 92 nucleotides
12406 and 12407 are separated by 305 nucleotides
mRNA_4035: 12403 - Hypothetical Protein, at 1,207,830 to 1,209,196
12403
mRNA_4036: 12404 - Hypothetical Protein, at 1,209,337 to 1,209,939
12404
mRNA_4037: 12405 - K12232 HECTD2 E3 ubiquitin-protein ligase HECTD2, at 1,210,152 to 1,214,937
12405
mRNA_4038: 12406 - K10772 APEX2 AP endonuclease 2, at 1,215,030 to 1,217,455
12406
mRNA_4039: 12407 - K00825 AADAT, KAT2 kynurenine/2-aminoadipate aminotransferase, at 1,217,761 to 1,219,740
12407
Group
Condition
mRNA
_4035
mRNA
_4036
mRNA
_4037
mRNA
_4038
mRNA
_4039
12403
12404
12405
12406
12407
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.7
-0.1
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
-0.1
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.9
+0.3
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
-0.1
+0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.2
+0.2
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-1.0
+0.1
+0.1
+0.2
auxotrophy
YNB Glucose
N.D.
-0.8
+0.1
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
-0.1
-0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
-0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.7
+0.1
+0.4
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.7
+0.3
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
+0.3
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.1
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.6
+0.3
-0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.1
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.5
+0.2
+0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
-0.1
+0.5
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
+0.1
+0.1
+0.5
auxotrophy
Dropout Complete
N.D.
-0.4
+0.3
+0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
+0.2
+0.2
-0.1
growth on ypd
YPD
N.D.
-0.3
-0.0
+0.2
+1.1
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