Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12404 and 12405 are separated by 212 nucleotides12405 and 12406 are separated by 92 nucleotides12406 and 12407 are separated by 305 nucleotides12407 and 12408 are separated by 141 nucleotides mRNA_4036: 12404 - Hypothetical Protein, at 1,209,337 to 1,209,939 12404 mRNA_4037: 12405 - K12232 HECTD2 E3 ubiquitin-protein ligase HECTD2, at 1,210,152 to 1,214,937 12405 mRNA_4038: 12406 - K10772 APEX2 AP endonuclease 2, at 1,215,030 to 1,217,455 12406 mRNA_4039: 12407 - K00825 AADAT, KAT2 kynurenine/2-aminoadipate aminotransferase, at 1,217,761 to 1,219,740 12407 mRNA_4040: 12408 - K06997 yggS, PROSC PLP dependent protein, at 1,219,882 to 1,220,973 12408
Group Condition mRNA_4036 mRNA_4037 mRNA_4038 mRNA_4039 mRNA_4040
12404 12405 12406 12407 12408
growth on ricinoleic acid YNB Ricinoleic Acid -1.0 +0.1 +0.1 +0.2 -0.8
growth on ricinoleic acid YNB Methylricinoleic Acid -0.7 +0.1 +0.4 -0.2 -0.9
facs on lipid accumulation Sorted High BODIPY Gate -0.7 -0.1 +0.0 -0.2 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 -0.1 -0.2 -0.3 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 -0.1 +0.2 -0.3 -0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 -0.1 -0.2 -0.0 -0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.4 +0.3 -0.2 +0.1 -0.4
growth on ricinoleic acid YNB Glucose -0.9 +0.3 -0.0 -0.2 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 -0.2 +0.2 -0.7 +0.1
auxotrophy YNB Glucose -0.8 +0.1 -0.0 +0.1 +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.4 -0.2 +0.1 +0.1 -0.0
ypd buoyancy 40 hrs Median Buoyancy -0.2 +0.1 +0.0 -0.0 -0.3
growth on oleic acid YNB Glucose -0.7 +0.3 -0.2 +0.3 +0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 -0.1 +0.5 -0.3 -0.4
growth on oleic acid YNB Oleic Acid -0.6 +0.3 -0.2 +0.3 +0.1
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.1 -0.1 -0.1 +0.1
auxotrophy YNB Glucose 75mM Arginine -0.5 +0.2 +0.1 +0.4 -0.1
auxotrophy YNB Glucose 75mM Methionine -0.5 +0.1 +0.1 +0.5 -0.0
auxotrophy Dropout Complete -0.4 +0.3 +0.3 +0.3 +0.0
ypd buoyancy 40 hrs High Buoyancy +0.3 +0.2 +0.2 -0.1 -0.0
growth on ypd YPD -0.3 -0.0 +0.2 +1.1 +0.2
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