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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12404 and 12405 are separated by 212 nucleotides
12405 and 12406 are separated by 92 nucleotides
12406 and 12407 are separated by 305 nucleotides
12407 and 12408 are separated by 141 nucleotides
mRNA_4036: 12404 - Hypothetical Protein, at 1,209,337 to 1,209,939
12404
mRNA_4037: 12405 - K12232 HECTD2 E3 ubiquitin-protein ligase HECTD2, at 1,210,152 to 1,214,937
12405
mRNA_4038: 12406 - K10772 APEX2 AP endonuclease 2, at 1,215,030 to 1,217,455
12406
mRNA_4039: 12407 - K00825 AADAT, KAT2 kynurenine/2-aminoadipate aminotransferase, at 1,217,761 to 1,219,740
12407
mRNA_4040: 12408 - K06997 yggS, PROSC PLP dependent protein, at 1,219,882 to 1,220,973
12408
Group
Condition
mRNA
_4036
mRNA
_4037
mRNA
_4038
mRNA
_4039
mRNA
_4040
12404
12405
12406
12407
12408
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
+0.1
+0.1
+0.2
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.1
+0.4
-0.2
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.1
+0.0
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
-0.2
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.1
+0.2
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.1
-0.2
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.3
-0.2
+0.1
-0.4
growth on ricinoleic acid
YNB Glucose
-0.9
+0.3
-0.0
-0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.2
+0.2
-0.7
+0.1
auxotrophy
YNB Glucose
-0.8
+0.1
-0.0
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.2
+0.1
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
+0.0
-0.0
-0.3
growth on oleic acid
YNB Glucose
-0.7
+0.3
-0.2
+0.3
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.1
+0.5
-0.3
-0.4
growth on oleic acid
YNB Oleic Acid
-0.6
+0.3
-0.2
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.1
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.2
+0.1
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.1
+0.1
+0.5
-0.0
auxotrophy
Dropout Complete
-0.4
+0.3
+0.3
+0.3
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.2
+0.2
-0.1
-0.0
growth on ypd
YPD
-0.3
-0.0
+0.2
+1.1
+0.2
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