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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12405 and 12406 are separated by 92 nucleotides
12406 and 12407 are separated by 305 nucleotides
12407 and 12408 are separated by 141 nucleotides
12408 and 12409 are separated by 394 nucleotides
mRNA_4037: 12405 - K12232 HECTD2 E3 ubiquitin-protein ligase HECTD2, at 1,210,152 to 1,214,937
12405
mRNA_4038: 12406 - K10772 APEX2 AP endonuclease 2, at 1,215,030 to 1,217,455
12406
mRNA_4039: 12407 - K00825 AADAT, KAT2 kynurenine/2-aminoadipate aminotransferase, at 1,217,761 to 1,219,740
12407
mRNA_4040: 12408 - K06997 yggS, PROSC PLP dependent protein, at 1,219,882 to 1,220,973
12408
mRNA_4041: 12409 - HMMPfam-Sds3-like-PF08598, at 1,221,368 to 1,222,599
12409
Group
Condition
mRNA
_4037
mRNA
_4038
mRNA
_4039
mRNA
_4040
mRNA
_4041
12405
12406
12407
12408
12409
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.5
-0.3
-0.4
-4.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.0
-0.2
-0.2
-3.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
-0.3
-0.3
-2.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
-0.0
-0.3
-2.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.3
-0.2
-2.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
+0.1
-0.0
-1.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
+0.1
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
+0.4
-0.1
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
+0.2
-0.8
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.4
-0.2
-0.9
+0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.1
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.5
-0.0
-0.4
growth on ypd
YPD
-0.0
+0.2
+1.1
+0.2
-1.1
auxotrophy
YNB Glucose
+0.1
-0.0
+0.1
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
-0.0
-0.2
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.2
-0.7
+0.1
+1.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.0
-0.3
+1.0
auxotrophy
Dropout Complete
+0.3
+0.3
+0.3
+0.0
+0.0
growth on oleic acid
YNB Oleic Acid
+0.3
-0.2
+0.3
+0.1
+0.7
growth on oleic acid
YNB Glucose
+0.3
-0.2
+0.3
+0.0
+1.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.1
-0.0
+1.2
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