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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12407 and 12408 are separated by 141 nucleotides
12408 and 12409 are separated by 394 nucleotides
12409 and 12410 are separated by 125 nucleotides
12410 and 12411 are separated by 539 nucleotides
mRNA_4039: 12407 - K00825 AADAT, KAT2 kynurenine/2-aminoadipate aminotransferase, at 1,217,761 to 1,219,740
12407
mRNA_4040: 12408 - K06997 yggS, PROSC PLP dependent protein, at 1,219,882 to 1,220,973
12408
mRNA_4041: 12409 - HMMPfam-Sds3-like-PF08598, at 1,221,368 to 1,222,599
12409
mRNA_4042: 12410 - KOG0807 Carbon-nitrogen hydrolase, at 1,222,725 to 1,223,895
12410
mRNA_4043: 12411 - Hypothetical Protein, at 1,224,435 to 1,225,613
12411
Group
Condition
mRNA
_4039
mRNA
_4040
mRNA
_4041
mRNA
_4042
mRNA
_4043
12407
12408
12409
12410
12411
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.4
-4.6
-0.5
-1.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.3
-2.8
+0.3
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
-3.3
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.3
-2.5
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
-2.0
+0.6
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.1
-1.0
-0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.9
+0.6
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.4
-0.4
+0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
-1.4
+0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.8
+0.3
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.0
-0.4
-0.4
+0.0
auxotrophy
YNB Glucose
+0.1
+0.1
+0.2
-0.1
-0.3
growth on ypd
YPD
+1.1
+0.2
-1.1
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.2
+0.5
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.0
+0.3
+0.3
auxotrophy
Dropout Complete
+0.3
+0.0
+0.0
-0.2
+0.5
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
+0.7
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.3
+1.0
+0.2
+0.6
growth on oleic acid
YNB Glucose
+0.3
+0.0
+1.1
+0.6
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.1
+1.3
+0.7
+0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+1.2
+0.1
+0.8
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