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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12415 and 12416 are separated by 218 nucleotides
12416 and 12417 are separated by 1331 nucleotides
12417 and 12418 are separated by 2286 nucleotides
12418 and 12419 are separated by 1460 nucleotides
mRNA_4047: 12415 - Hypothetical Protein, at 1,233,191 to 1,233,964
12415
mRNA_4048: 12416 - Hypothetical Protein, at 1,234,183 to 1,234,746
12416
mRNA_4049: 12417 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 1,236,078 to 1,237,368
12417
mRNA_4050: 12418 - K02885 RP-L19e, RPL19 large subunit ribosomal protein L19e, at 1,239,655 to 1,240,764
12418
mRNA_4051: 12419 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 1,242,225 to 1,242,676
12419
Group
Condition
mRNA
_4047
mRNA
_4048
mRNA
_4049
mRNA
_4050
mRNA
_4051
12415
12416
12417
12418
12419
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.1
-2.6
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
-0.6
N.D.
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
+0.1
N.D.
-1.2
growth on ypd
YPD
-0.2
+0.0
-0.3
N.D.
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
-0.3
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.3
-1.3
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.0
+0.0
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.1
N.D.
+0.1
growth on oleic acid
YNB Glucose
-0.1
-0.0
+0.4
N.D.
+0.1
auxotrophy
Dropout Complete
-0.0
+0.2
-0.2
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
+0.4
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
+0.2
N.D.
+0.4
auxotrophy
YNB Glucose
+0.1
-0.1
+0.5
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+0.3
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
+0.2
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
+0.9
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
+0.0
N.D.
+1.0
growth on ricinoleic acid
YNB Glucose
+0.6
+0.2
+0.5
N.D.
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
+0.5
+0.8
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
+0.4
+0.3
N.D.
+0.5
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