Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12417 and 12418 are separated by 2286 nucleotides12418 and 12419 are separated by 1460 nucleotides12419 and 12420 are separated by 400 nucleotides12420 and 12421 are separated by 381 nucleotides mRNA_4049: 12417 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 1,236,078 to 1,237,368 12417 mRNA_4050: 12418 - K02885 RP-L19e, RPL19 large subunit ribosomal protein L19e, at 1,239,655 to 1,240,764 12418 mRNA_4051: 12419 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 1,242,225 to 1,242,676 12419 mRNA_4052: 12420 - HMMPfam-Transcription factor Opi1-PF08618, at 1,243,077 to 1,245,269 12420 mRNA_4053: 12421 - K00602 purH phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase, at 1,245,651 to 1,248,069 12421
Group Condition mRNA_4049 mRNA_4050 mRNA_4051 mRNA_4052 mRNA_4053
12417 12418 12419 12420 12421
facs on lipid accumulation Sorted High BODIPY Gate -0.6 N.D. -1.0 -1.0 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -2.6 N.D. +0.4 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 N.D. -1.2 -0.5 N.D.
growth on ypd YPD -0.3 N.D. -0.6 -0.0 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.3 N.D. -0.3 -0.0 N.D.
growth on oleic acid YNB Oleic Acid +0.1 N.D. -0.3 +0.0 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 N.D. +0.6 -0.9 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.8 N.D. -0.3 -0.5 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.1 N.D. +0.1 -0.2 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.0 N.D. +0.0 +0.1 N.D.
auxotrophy Dropout Complete -0.2 N.D. +0.4 +0.3 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 N.D. +0.5 -0.2 N.D.
growth on oleic acid YNB Glucose +0.4 N.D. +0.1 +0.2 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.2 N.D. +0.4 +0.2 N.D.
growth on ricinoleic acid YNB Glucose +0.5 N.D. +0.5 +0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.4 N.D. +0.4 +0.3 N.D.
auxotrophy YNB Glucose +0.5 N.D. +0.3 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 N.D. +0.3 +0.9 N.D.
auxotrophy YNB Glucose 75mM Methionine +0.9 N.D. -0.0 +0.7 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -1.3 N.D. +0.3 +2.6 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 N.D. +1.0 +0.9 N.D.
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