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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12419 and 12420 are separated by 400 nucleotides
12420 and 12421 are separated by 381 nucleotides
12421 and 12422 are separated by 163 nucleotides
12422 and 12423 are separated by 108 nucleotides
mRNA_4051: 12419 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 1,242,225 to 1,242,676
12419
mRNA_4052: 12420 - HMMPfam-Transcription factor Opi1-PF08618, at 1,243,077 to 1,245,269
12420
mRNA_4053: 12421 - K00602 purH phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase, at 1,245,651 to 1,248,069
12421
mRNA_4054: 12422 - KOG2973 Uncharacterized conserved protein, at 1,248,233 to 1,250,054
12422
mRNA_4055: 12423 - HMMPfam-Glyoxalase-like domain-PF12681,SUPERFAMILY--SSF54593, at 1,250,163 to 1,250,733
12423
Group
Condition
mRNA
_4051
mRNA
_4052
mRNA
_4053
mRNA
_4054
mRNA
_4055
12419
12420
12421
12422
12423
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
-1.0
N.D.
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.2
-0.5
N.D.
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.0
N.D.
-0.7
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
N.D.
-0.8
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
N.D.
-1.5
+0.1
growth on ypd
YPD
-0.6
-0.0
N.D.
+0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.3
N.D.
-1.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
N.D.
-0.6
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.5
N.D.
-0.2
+0.5
growth on oleic acid
YNB Glucose
+0.1
+0.2
N.D.
-0.4
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
+0.0
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.9
N.D.
+0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.2
N.D.
-0.6
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.2
N.D.
-0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.5
+0.1
N.D.
-0.3
+0.3
auxotrophy
Dropout Complete
+0.4
+0.3
N.D.
-0.2
+0.3
auxotrophy
YNB Glucose
+0.3
+0.3
N.D.
+0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.7
N.D.
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.9
N.D.
+0.3
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+2.6
N.D.
-0.4
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
+0.9
N.D.
+0.2
+0.3
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