Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12419 and 12420 are separated by 400 nucleotides12420 and 12421 are separated by 381 nucleotides12421 and 12422 are separated by 163 nucleotides12422 and 12423 are separated by 108 nucleotides mRNA_4051: 12419 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 1,242,225 to 1,242,676 12419 mRNA_4052: 12420 - HMMPfam-Transcription factor Opi1-PF08618, at 1,243,077 to 1,245,269 12420 mRNA_4053: 12421 - K00602 purH phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase, at 1,245,651 to 1,248,069 12421 mRNA_4054: 12422 - KOG2973 Uncharacterized conserved protein, at 1,248,233 to 1,250,054 12422 mRNA_4055: 12423 - HMMPfam-Glyoxalase-like domain-PF12681,SUPERFAMILY--SSF54593, at 1,250,163 to 1,250,733 12423
Group Condition mRNA_4051 mRNA_4052 mRNA_4053 mRNA_4054 mRNA_4055
12419 12420 12421 12422 12423
facs on lipid accumulation Sorted High BODIPY Gate -1.0 -1.0 N.D. -0.5 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -1.2 -0.5 N.D. -0.1 -0.3
ypd buoyancy 40 hrs High Buoyancy -0.3 -0.0 N.D. -0.7 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.2 N.D. -0.8 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.4 +0.1 N.D. -1.5 +0.1
growth on ypd YPD -0.6 -0.0 N.D. +0.2 -0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.4 +0.3 N.D. -1.0 -0.3
ypd buoyancy 40 hrs Median Buoyancy +0.0 +0.1 N.D. -0.6 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 -0.5 N.D. -0.2 +0.5
growth on oleic acid YNB Glucose +0.1 +0.2 N.D. -0.4 -0.2
growth on oleic acid YNB Oleic Acid -0.3 +0.0 N.D. -0.1 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.6 -0.9 N.D. +0.3 -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid +0.5 -0.2 N.D. -0.6 +0.3
auxotrophy YNB Glucose 75mM Arginine +0.4 +0.2 N.D. -0.3 +0.1
growth on ricinoleic acid YNB Glucose +0.5 +0.1 N.D. -0.3 +0.3
auxotrophy Dropout Complete +0.4 +0.3 N.D. -0.2 +0.3
auxotrophy YNB Glucose +0.3 +0.3 N.D. +0.0 +0.4
auxotrophy YNB Glucose 75mM Methionine -0.0 +0.7 N.D. -0.1 +0.5
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.3 +0.9 N.D. +0.3 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate +0.3 +2.6 N.D. -0.4 -0.8
buoyancy on lipid accumulation 40 hrs High Buoyancy +1.0 +0.9 N.D. +0.2 +0.3
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