Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
12420 and 12421 are separated by 381 nucleotides
12421 and 12422 are separated by 163 nucleotides
12422 and 12423 are separated by 108 nucleotides
12423 and 12424 are separated by 211 nucleotides
mRNA_4052: 12420 - HMMPfam-Transcription factor Opi1-PF08618, at 1,243,077 to 1,245,269
12420
mRNA_4053: 12421 - K00602 purH phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase, at 1,245,651 to 1,248,069
12421
mRNA_4054: 12422 - KOG2973 Uncharacterized conserved protein, at 1,248,233 to 1,250,054
12422
mRNA_4055: 12423 - HMMPfam-Glyoxalase-like domain-PF12681,SUPERFAMILY--SSF54593, at 1,250,163 to 1,250,733
12423
mRNA_4056: 12424 - BLAST tRNA(His) guanylyltransferase [Kwoniella heveanensis ..., at 1,250,945 to 1,252,332
12424
Group
Condition
mRNA
_4052
mRNA
_4053
mRNA
_4054
mRNA
_4055
mRNA
_4056
12420
12421
12422
12423
12424
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-1.5
+0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
-1.0
-0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
N.D.
-0.5
+0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.8
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
-0.1
-0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-0.6
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.6
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
N.D.
+0.3
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
-0.7
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
N.D.
-0.2
+0.5
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.3
+0.3
-0.4
growth on oleic acid
YNB Glucose
+0.2
N.D.
-0.4
-0.2
+0.1
growth on ypd
YPD
-0.0
N.D.
+0.2
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
-0.1
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.3
+0.1
-0.0
auxotrophy
Dropout Complete
+0.3
N.D.
-0.2
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.9
N.D.
+0.3
-0.3
-0.2
auxotrophy
YNB Glucose
+0.3
N.D.
+0.0
+0.4
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+2.6
N.D.
-0.4
-0.8
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.7
N.D.
-0.1
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
N.D.
+0.2
+0.3
-0.3
remove
mRNA_4052
plot
remove
mRNA_4053
plot
remove
mRNA_4054
remove
mRNA_4055
plot
remove
mRNA_4056
plot