Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12420 and 12421 are separated by 381 nucleotides12421 and 12422 are separated by 163 nucleotides12422 and 12423 are separated by 108 nucleotides12423 and 12424 are separated by 211 nucleotides mRNA_4052: 12420 - HMMPfam-Transcription factor Opi1-PF08618, at 1,243,077 to 1,245,269 12420 mRNA_4053: 12421 - K00602 purH phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase, at 1,245,651 to 1,248,069 12421 mRNA_4054: 12422 - KOG2973 Uncharacterized conserved protein, at 1,248,233 to 1,250,054 12422 mRNA_4055: 12423 - HMMPfam-Glyoxalase-like domain-PF12681,SUPERFAMILY--SSF54593, at 1,250,163 to 1,250,733 12423 mRNA_4056: 12424 - BLAST tRNA(His) guanylyltransferase [Kwoniella heveanensis ..., at 1,250,945 to 1,252,332 12424
Group Condition mRNA_4052 mRNA_4053 mRNA_4054 mRNA_4055 mRNA_4056
12420 12421 12422 12423 12424
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 N.D. -1.5 +0.1 -0.6
facs on lipid accumulation Sorted No BODIPY Gate +0.3 N.D. -1.0 -0.3 -0.3
facs on lipid accumulation Sorted High BODIPY Gate -1.0 N.D. -0.5 +0.0 +0.3
ypd buoyancy 40 hrs Low Buoyancy -0.2 N.D. -0.8 -0.3 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 N.D. -0.1 -0.3 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 N.D. -0.6 +0.3 -0.3
ypd buoyancy 40 hrs Median Buoyancy +0.1 N.D. -0.6 -0.1 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.9 N.D. +0.3 -0.0 +0.1
ypd buoyancy 40 hrs High Buoyancy -0.0 N.D. -0.7 -0.1 +0.4
growth on ricinoleic acid YNB Ricinoleic Acid -0.5 N.D. -0.2 +0.5 -0.1
growth on ricinoleic acid YNB Glucose +0.1 N.D. -0.3 +0.3 -0.4
growth on oleic acid YNB Glucose +0.2 N.D. -0.4 -0.2 +0.1
growth on ypd YPD -0.0 N.D. +0.2 -0.2 -0.3
growth on oleic acid YNB Oleic Acid +0.0 N.D. -0.1 +0.1 -0.3
auxotrophy YNB Glucose 75mM Arginine +0.2 N.D. -0.3 +0.1 -0.0
auxotrophy Dropout Complete +0.3 N.D. -0.2 +0.3 +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.9 N.D. +0.3 -0.3 -0.2
auxotrophy YNB Glucose +0.3 N.D. +0.0 +0.4 +0.0
facs on lipid accumulation Sorted Low BODIPY Gate +2.6 N.D. -0.4 -0.8 -0.3
auxotrophy YNB Glucose 75mM Methionine +0.7 N.D. -0.1 +0.5 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.9 N.D. +0.2 +0.3 -0.3
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