Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12421 and 12422 are separated by 163 nucleotides12422 and 12423 are separated by 108 nucleotides12423 and 12424 are separated by 211 nucleotides12424 and 12425 are separated by 484 nucleotides mRNA_4053: 12421 - K00602 purH phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase, at 1,245,651 to 1,248,069 12421 mRNA_4054: 12422 - KOG2973 Uncharacterized conserved protein, at 1,248,233 to 1,250,054 12422 mRNA_4055: 12423 - HMMPfam-Glyoxalase-like domain-PF12681,SUPERFAMILY--SSF54593, at 1,250,163 to 1,250,733 12423 mRNA_4056: 12424 - BLAST tRNA(His) guanylyltransferase [Kwoniella heveanensis ..., at 1,250,945 to 1,252,332 12424 mRNA_4057: 12425 - Hypothetical Protein, at 1,252,817 to 1,253,970 12425
Group Condition mRNA_4053 mRNA_4054 mRNA_4055 mRNA_4056 mRNA_4057
12421 12422 12423 12424 12425
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -0.4 -0.8 -0.3 -1.0
facs on lipid accumulation Sorted No BODIPY Gate N.D. -1.0 -0.3 -0.3 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation N.D. -1.5 +0.1 -0.6 +0.6
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. +0.3 -0.3 -0.2 -1.1
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. -0.6 +0.3 -0.3 -0.3
ypd buoyancy 40 hrs Low Buoyancy N.D. -0.8 -0.3 +0.2 +0.0
growth on oleic acid YNB Glucose N.D. -0.4 -0.2 +0.1 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. -0.1 -0.3 -0.1 -0.2
ypd buoyancy 40 hrs Median Buoyancy N.D. -0.6 -0.1 +0.1 +0.0
growth on oleic acid YNB Oleic Acid N.D. -0.1 +0.1 -0.3 -0.2
ypd buoyancy 40 hrs High Buoyancy N.D. -0.7 -0.1 +0.4 -0.0
growth on ricinoleic acid YNB Glucose N.D. -0.3 +0.3 -0.4 +0.3
facs on lipid accumulation Sorted High BODIPY Gate N.D. -0.5 +0.0 +0.3 +0.0
growth on ricinoleic acid YNB Ricinoleic Acid N.D. -0.2 +0.5 -0.1 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. +0.2 +0.3 -0.3 -0.0
auxotrophy YNB Glucose 75mM Arginine N.D. -0.3 +0.1 -0.0 +0.5
growth on ypd YPD N.D. +0.2 -0.2 -0.3 +0.7
auxotrophy YNB Glucose 75mM Methionine N.D. -0.1 +0.5 -0.0 +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. +0.3 -0.0 +0.1 +0.1
auxotrophy YNB Glucose N.D. +0.0 +0.4 +0.0 +0.4
auxotrophy Dropout Complete N.D. -0.2 +0.3 +0.3 +0.5
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