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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12421 and 12422 are separated by 163 nucleotides
12422 and 12423 are separated by 108 nucleotides
12423 and 12424 are separated by 211 nucleotides
12424 and 12425 are separated by 484 nucleotides
mRNA_4053: 12421 - K00602 purH phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase, at 1,245,651 to 1,248,069
12421
mRNA_4054: 12422 - KOG2973 Uncharacterized conserved protein, at 1,248,233 to 1,250,054
12422
mRNA_4055: 12423 - HMMPfam-Glyoxalase-like domain-PF12681,SUPERFAMILY--SSF54593, at 1,250,163 to 1,250,733
12423
mRNA_4056: 12424 - BLAST tRNA(His) guanylyltransferase [Kwoniella heveanensis ..., at 1,250,945 to 1,252,332
12424
mRNA_4057: 12425 - Hypothetical Protein, at 1,252,817 to 1,253,970
12425
Group
Condition
mRNA
_4053
mRNA
_4054
mRNA
_4055
mRNA
_4056
mRNA
_4057
12421
12422
12423
12424
12425
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
-0.8
-0.3
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.0
-0.3
-0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.5
+0.1
-0.6
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
-0.3
-0.2
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.6
+0.3
-0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.8
-0.3
+0.2
+0.0
growth on oleic acid
YNB Glucose
N.D.
-0.4
-0.2
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.3
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.6
-0.1
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.1
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.7
-0.1
+0.4
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
+0.3
-0.4
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.5
+0.0
+0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
+0.5
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.3
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
+0.1
-0.0
+0.5
growth on ypd
YPD
N.D.
+0.2
-0.2
-0.3
+0.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.5
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.0
+0.1
+0.1
auxotrophy
YNB Glucose
N.D.
+0.0
+0.4
+0.0
+0.4
auxotrophy
Dropout Complete
N.D.
-0.2
+0.3
+0.3
+0.5
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