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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12424 and 12425 are separated by 484 nucleotides
12425 and 12426 are separated by 834 nucleotides
12426 and 12427 are separated by 329 nucleotides
12427 and 12428 are separated by 189 nucleotides
mRNA_4056: 12424 - BLAST tRNA(His) guanylyltransferase [Kwoniella heveanensis ..., at 1,250,945 to 1,252,332
12424
mRNA_4057: 12425 - Hypothetical Protein, at 1,252,817 to 1,253,970
12425
mRNA_4058: 12426 - HMMPfam-Transcription factor Pcc1-PF09341, at 1,254,805 to 1,255,288
12426
mRNA_4059: 12427 - Hypothetical Protein, at 1,255,618 to 1,257,004
12427
mRNA_4060: 12428 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 1,257,194 to 1,260,711
12428
Group
Condition
mRNA
_4056
mRNA
_4057
mRNA
_4058
mRNA
_4059
mRNA
_4060
12424
12425
12426
12427
12428
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-1.0
N.D.
+0.0
-1.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-1.1
N.D.
-0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.3
N.D.
+0.2
-0.7
growth on oleic acid
YNB Glucose
+0.1
-0.3
N.D.
-0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.0
N.D.
-0.2
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.0
N.D.
-0.0
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.6
N.D.
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.0
N.D.
-0.3
+1.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.5
N.D.
-0.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
N.D.
-0.0
+1.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.0
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.4
+0.3
N.D.
-0.1
+0.8
growth on ypd
YPD
-0.3
+0.7
N.D.
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
N.D.
-0.0
+1.0
auxotrophy
Dropout Complete
+0.3
+0.5
N.D.
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
N.D.
+0.0
+0.7
auxotrophy
YNB Glucose
+0.0
+0.4
N.D.
+0.3
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.3
N.D.
+0.1
+1.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
+0.1
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
N.D.
-0.1
+1.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.0
N.D.
+0.4
+0.5
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