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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12433 and 12434 are separated by 946 nucleotides
12434 and 12435 are separated by 131 nucleotides
12435 and 12436 are separated by 539 nucleotides
12436 and 12437 are separated by 171 nucleotides
mRNA_4065: 12433 - KOG1198 Zinc-binding oxidoreductase, at 1,270,736 to 1,272,325
12433
mRNA_4066: 12434 - K03426 E3.6.1.22, NUDT12, nudC NAD+ diphosphatase, at 1,273,272 to 1,275,258
12434
mRNA_4067: 12435 - KOG0324 Uncharacterized conserved protein, at 1,275,390 to 1,276,654
12435
mRNA_4068: 12436 - K02575 NRT, narK, nrtP, nasA MFS transporter, NNP family, nitrate/nitrite transporter, at 1,277,194 to 1,279,271
12436
mRNA_4069: 12437 - K05288 PIGO phosphatidylinositol glycan, class O, at 1,279,443 to 1,282,832
12437
Group
Condition
mRNA
_4065
mRNA
_4066
mRNA
_4067
mRNA
_4068
mRNA
_4069
12433
12434
12435
12436
12437
growth on ypd
YPD
-1.5
-0.1
-0.5
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
+0.1
+0.3
-0.6
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-1.7
+0.1
-0.3
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.2
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.1
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
-0.6
+0.3
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
+0.3
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+1.1
-0.6
-0.3
+0.3
N.D.
auxotrophy
YNB Glucose
+1.1
-0.4
+0.0
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.7
+0.1
-0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.5
+0.9
+0.0
N.D.
growth on oleic acid
YNB Glucose
+0.4
+0.1
-0.2
+0.5
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.4
+0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
+0.4
+0.3
N.D.
auxotrophy
Dropout Complete
+1.7
-0.5
-0.4
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+1.7
-0.5
-0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.6
-0.3
+0.9
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
-0.4
+0.7
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.1
-0.3
+0.8
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
+0.3
+0.4
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.2
+0.1
+0.4
+0.5
N.D.
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