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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12438 and 12439 are separated by 707 nucleotides
12439 and 12440 are separated by 683 nucleotides
12440 and 12441 are separated by 1147 nucleotides
12441 and 12442 are separated by 307 nucleotides
mRNA_4070: 12438 - K02877 RP-L15e, RPL15 large subunit ribosomal protein L15e, at 1,283,511 to 1,284,371
12438
mRNA_4071: 12439 - BLAST putative upf0132 domain-containing protein [Diaporthe..., at 1,285,079 to 1,285,837
12439
mRNA_4072: 12440 - K16575 ACTR1, ARP1 centractin, at 1,286,521 to 1,288,236
12440
mRNA_4073: 12441 - KOG0961 Predicted Zn2+-dependent endopeptidase, insulinase superfamily, at 1,289,384 to 1,292,413
12441
mRNA_4074: 12442 - KOG0961 Predicted Zn2+-dependent endopeptidase, insulinase superfamily, at 1,292,721 to 1,296,857
12442
Group
Condition
mRNA
_4070
mRNA
_4071
mRNA
_4072
mRNA
_4073
mRNA
_4074
12438
12439
12440
12441
12442
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
N.D.
-0.7
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
N.D.
-0.2
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
N.D.
-0.2
-0.4
auxotrophy
Dropout Complete
N.D.
-0.0
N.D.
-0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
N.D.
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
N.D.
-0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
N.D.
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
N.D.
-0.5
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.3
N.D.
-0.4
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
N.D.
-0.1
-0.3
growth on ypd
YPD
N.D.
+0.7
N.D.
-0.2
-0.5
auxotrophy
YNB Glucose
N.D.
+0.3
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
N.D.
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
N.D.
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
N.D.
+0.3
+0.4
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