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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12441 and 12442 are separated by 307 nucleotides
12442 and 12443 are separated by 289 nucleotides
12443 and 12444 are separated by 565 nucleotides
12444 and 12445 are separated by 722 nucleotides
mRNA_4073: 12441 - KOG0961 Predicted Zn2+-dependent endopeptidase, insulinase superfamily, at 1,289,384 to 1,292,413
12441
mRNA_4074: 12442 - KOG0961 Predicted Zn2+-dependent endopeptidase, insulinase superfamily, at 1,292,721 to 1,296,857
12442
mRNA_4075: 12443 - Hypothetical Protein, at 1,297,147 to 1,298,186
12443
mRNA_4076: 12444 - K12486 SMAP stromal membrane-associated protein, at 1,298,752 to 1,301,700
12444
mRNA_4077: 12445 - K07101 K07101 uncharacterized protein, at 1,302,423 to 1,303,629
12445
Group
Condition
mRNA
_4073
mRNA
_4074
mRNA
_4075
mRNA
_4076
mRNA
_4077
12441
12442
12443
12444
12445
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.4
-0.3
-0.2
+0.2
growth on ypd
YPD
-0.2
-0.5
-0.1
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.1
-0.0
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.0
-0.2
-0.3
+0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.4
-0.1
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
-0.2
-0.5
-0.1
+0.4
-0.1
auxotrophy
YNB Glucose
-0.0
-0.1
-0.2
+0.1
-0.1
auxotrophy
Dropout Complete
-0.1
-0.5
-0.0
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.3
-0.1
+0.3
-0.1
growth on oleic acid
YNB Glucose
-0.4
-0.3
-0.0
+0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.3
-0.0
+0.5
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
+0.2
+0.1
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
+0.2
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
-0.2
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.2
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
-0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
-0.2
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
+0.3
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
+0.0
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.4
+0.4
-0.1
-0.1
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