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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12443 and 12444 are separated by 565 nucleotides
12444 and 12445 are separated by 722 nucleotides
12445 and 12446 are separated by 930 nucleotides
12446 and 12447 are separated by 231 nucleotides
mRNA_4075: 12443 - Hypothetical Protein, at 1,297,147 to 1,298,186
12443
mRNA_4076: 12444 - K12486 SMAP stromal membrane-associated protein, at 1,298,752 to 1,301,700
12444
mRNA_4077: 12445 - K07101 K07101 uncharacterized protein, at 1,302,423 to 1,303,629
12445
mRNA_4078: 12446 - K15113 SLC25A28_37, MFRN solute carrier family 25 (mitochondrial iron transporter), member 28/37, at 1,304,560 to 1,305,720
12446
mRNA_4079: 12447 - KOG2518 5'-3' exonuclease, at 1,305,952 to 1,309,026
12447
Group
Condition
mRNA
_4075
mRNA
_4076
mRNA
_4077
mRNA
_4078
mRNA
_4079
12443
12444
12445
12446
12447
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
-0.4
N.D.
-2.1
growth on ypd
YPD
-0.1
+0.2
-0.4
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.2
+0.2
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
+0.0
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.1
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.3
+0.2
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.0
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+0.2
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose
-0.2
+0.1
-0.1
N.D.
+0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
+0.1
N.D.
+0.6
auxotrophy
Dropout Complete
-0.0
+0.2
+0.0
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
+0.2
N.D.
+0.6
growth on oleic acid
YNB Glucose
-0.0
+0.0
+0.3
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
-0.1
+0.4
-0.1
N.D.
+0.6
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.0
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
+0.1
N.D.
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.3
-0.1
N.D.
+1.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.5
+0.0
N.D.
+1.2
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