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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12446 and 12447 are separated by 231 nucleotides
12447 and 12448 are separated by 61 nucleotides
12448 and 12449 are separated by 3570 nucleotides
12449 and 12450 are separated by 2633 nucleotides
mRNA_4078: 12446 - K15113 SLC25A28_37, MFRN solute carrier family 25 (mitochondrial iron transporter), member 28/37, at 1,304,560 to 1,305,720
12446
mRNA_4079: 12447 - KOG2518 5'-3' exonuclease, at 1,305,952 to 1,309,026
12447
mRNA_4080: 12448 - Hypothetical Protein, at 1,309,088 to 1,309,498
12448
mRNA_4081: 12449 - K09385 FOXG forkhead box protein G, at 1,313,069 to 1,313,296
12449
mRNA_4082: 12450 - KOG2194 Aminopeptidases of the M20 family, at 1,315,930 to 1,319,483
12450
Group
Condition
mRNA
_4078
mRNA
_4079
mRNA
_4080
mRNA
_4081
mRNA
_4082
12446
12447
12448
12449
12450
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-2.1
+0.3
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.2
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.2
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.3
N.D.
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.4
-0.1
N.D.
-0.3
growth on ypd
YPD
N.D.
-0.3
+0.4
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.6
+0.0
N.D.
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
-0.1
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-0.1
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+0.0
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.1
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.9
-0.4
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.6
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose
N.D.
+0.7
+0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
+0.9
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.6
+0.5
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+1.2
+0.6
N.D.
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+1.6
+0.0
N.D.
-0.3
auxotrophy
Dropout Complete
N.D.
+0.5
+0.9
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+1.0
+0.8
N.D.
-0.1
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