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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12451 and 12452 are separated by 1782 nucleotides
12452 and 12453 are separated by 328 nucleotides
12453 and 12454 are separated by 1275 nucleotides
12454 and 12455 are separated by 261 nucleotides
mRNA_4083: 12451 - K03593 mrp, NUBPL ATP-binding protein involved in chromosome partitioning, at 1,319,872 to 1,321,104
12451
mRNA_4084: 12452 - KOG1674 Cyclin, at 1,322,887 to 1,323,848
12452
mRNA_4085: 12453 - Hypothetical Protein, at 1,324,177 to 1,324,971
12453
mRNA_4086: 12454 - Hypothetical Protein, at 1,326,247 to 1,326,813
12454
mRNA_4087: 12455 - HMMPfam-Tannase and feruloyl esterase-PF07519,SUPERFAMILY--SSF53474, at 1,327,075 to 1,329,367
12455
Group
Condition
mRNA
_4083
mRNA
_4084
mRNA
_4085
mRNA
_4086
mRNA
_4087
12451
12452
12453
12454
12455
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
-5.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.1
-5.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.0
-1.2
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.0
-1.7
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-1.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.3
-0.0
-0.5
growth on ypd
YPD
N.D.
N.D.
-0.2
-0.9
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.0
-0.3
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
-0.6
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.1
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.0
+0.2
-0.3
auxotrophy
YNB Glucose
N.D.
N.D.
-0.0
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.0
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.0
-0.2
auxotrophy
Dropout Complete
N.D.
N.D.
-0.0
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.0
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.0
+0.0
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
+0.4
+0.2
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