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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12454 and 12455 are separated by 261 nucleotides
12455 and 12456 are separated by 124 nucleotides
12456 and 12457 are separated by 393 nucleotides
12457 and 12458 are separated by 175 nucleotides
mRNA_4086: 12454 - Hypothetical Protein, at 1,326,247 to 1,326,813
12454
mRNA_4087: 12455 - HMMPfam-Tannase and feruloyl esterase-PF07519,SUPERFAMILY--SSF53474, at 1,327,075 to 1,329,367
12455
mRNA_4088: 12456 - Hypothetical Protein, at 1,329,492 to 1,330,466
12456
mRNA_4089: 12457 - Hypothetical Protein, at 1,330,860 to 1,331,971
12457
mRNA_4090: 12458 - K18327 REXO4, REX4 RNA exonuclease 4, at 1,332,147 to 1,333,809
12458
Group
Condition
mRNA
_4086
mRNA
_4087
mRNA
_4088
mRNA
_4089
mRNA
_4090
12454
12455
12456
12457
12458
ypd buoyancy
40 hrs Low Buoyancy
-5.5
-0.1
-0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-5.2
-0.1
+0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.2
-0.3
+0.0
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-1.2
-0.1
-0.2
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.2
-0.4
-0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.2
-0.5
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.5
-0.1
-0.4
N.D.
growth on oleic acid
YNB Oleic Acid
-1.7
+0.3
-0.1
+0.6
N.D.
growth on ypd
YPD
-0.9
+0.2
+0.3
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.4
+0.1
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
-0.2
-0.0
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.0
+0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.1
-0.3
N.D.
auxotrophy
YNB Glucose
+0.0
-0.1
+0.1
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
+0.0
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
+0.1
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
-0.2
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.3
+0.2
-0.2
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.4
-0.2
+0.2
N.D.
auxotrophy
Dropout Complete
-0.0
+0.1
+0.3
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.2
-0.1
-0.2
N.D.
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