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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12456 and 12457 are separated by 393 nucleotides
12457 and 12458 are separated by 175 nucleotides
12458 and 12459 are separated by 299 nucleotides
12459 and 12460 are separated by 166 nucleotides
mRNA_4088: 12456 - Hypothetical Protein, at 1,329,492 to 1,330,466
12456
mRNA_4089: 12457 - Hypothetical Protein, at 1,330,860 to 1,331,971
12457
mRNA_4090: 12458 - K18327 REXO4, REX4 RNA exonuclease 4, at 1,332,147 to 1,333,809
12458
mRNA_4091: 12459 - K03362 FBXW1_11, BTRC, beta-TRCP F-box and WD-40 domain protein 1/11, at 1,334,109 to 1,336,957
12459
mRNA_4092: 12460 - KOG0941 E3 ubiquitin protein ligase, at 1,337,124 to 1,338,710
12460
Group
Condition
mRNA
_4088
mRNA
_4089
mRNA
_4090
mRNA
_4091
mRNA
_4092
12456
12457
12458
12459
12460
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.4
N.D.
-0.2
-1.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.2
N.D.
+0.0
-1.9
growth on ricinoleic acid
YNB Glucose
-0.0
-0.4
N.D.
+0.1
-1.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.3
N.D.
-0.1
-1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.2
N.D.
-0.4
-1.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.0
N.D.
+0.1
-1.5
growth on oleic acid
YNB Glucose
-0.2
+0.2
N.D.
+0.1
-1.1
auxotrophy
Dropout Complete
+0.3
-0.0
N.D.
+0.2
-1.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
N.D.
+0.4
-1.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
N.D.
+0.4
-1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
N.D.
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
N.D.
+0.0
-0.3
growth on ypd
YPD
+0.3
-0.5
N.D.
+0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.3
N.D.
+0.9
-1.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
N.D.
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.6
N.D.
+0.1
-0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
N.D.
+0.3
-0.5
auxotrophy
YNB Glucose
+0.1
-0.2
N.D.
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
N.D.
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
N.D.
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
N.D.
+0.3
-0.0
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