Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
12458 and 12459 are separated by 299 nucleotides
12459 and 12460 are separated by 166 nucleotides
12460 and 12461 are separated by 235 nucleotides
12461 and 12462 are separated by 975 nucleotides
mRNA_4090: 12458 - K18327 REXO4, REX4 RNA exonuclease 4, at 1,332,147 to 1,333,809
12458
mRNA_4091: 12459 - K03362 FBXW1_11, BTRC, beta-TRCP F-box and WD-40 domain protein 1/11, at 1,334,109 to 1,336,957
12459
mRNA_4092: 12460 - KOG0941 E3 ubiquitin protein ligase, at 1,337,124 to 1,338,710
12460
mRNA_4093: 12461 - Hypothetical Protein, at 1,338,946 to 1,342,318
12461
mRNA_4094: 12462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,343,294 to 1,345,409
12462
Group
Condition
mRNA
_4090
mRNA
_4091
mRNA
_4092
mRNA
_4093
mRNA
_4094
12458
12459
12460
12461
12462
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-1.6
-0.9
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
-1.9
-0.3
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-1.7
+0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-1.4
+0.3
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-1.5
-0.1
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.1
-1.1
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
-1.4
+0.6
+0.3
auxotrophy
Dropout Complete
N.D.
+0.2
-1.3
+0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
-1.1
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
-1.3
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
+0.0
-0.7
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
-0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
-0.2
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.9
-1.0
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
-0.0
+0.7
-0.9
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.8
+0.6
+0.1
growth on ypd
YPD
N.D.
+0.2
-0.4
+0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.0
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
-0.5
+0.4
+0.1
auxotrophy
YNB Glucose
N.D.
+0.4
-0.3
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.0
+0.6
+0.1
remove
mRNA_4090
plot
remove
mRNA_4091
plot
remove
mRNA_4092
remove
mRNA_4093
plot
remove
mRNA_4094
plot