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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12460 and 12461 are separated by 235 nucleotides
12461 and 12462 are separated by 975 nucleotides
12462 and 12463 are separated by 1358 nucleotides
12463 and 12464 are separated by 396 nucleotides
mRNA_4092: 12460 - KOG0941 E3 ubiquitin protein ligase, at 1,337,124 to 1,338,710
12460
mRNA_4093: 12461 - Hypothetical Protein, at 1,338,946 to 1,342,318
12461
mRNA_4094: 12462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,343,294 to 1,345,409
12462
mRNA_4095: 12463 - BLAST Valine--tRNA ligase [Rhizoctonia solani], at 1,346,768 to 1,349,335
12463
mRNA_4096: 12464 - BLAST bestrophin domain protein [Rhizoctonia solani AG-3 Rh..., at 1,349,732 to 1,355,090
12464
Group
Condition
mRNA
_4092
mRNA
_4093
mRNA
_4094
mRNA
_4095
mRNA
_4096
12460
12461
12462
12463
12464
facs on lipid accumulation
Sorted No BODIPY Gate
-1.9
-0.3
-0.5
-0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.6
-0.9
-0.0
-0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-1.5
-0.1
+0.2
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
-1.7
+0.2
-0.4
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.4
+0.3
-0.5
-0.2
+0.3
growth on oleic acid
YNB Glucose
-1.1
+0.2
-0.1
-0.2
-0.0
auxotrophy
Dropout Complete
-1.3
+0.4
+0.1
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-1.1
+0.0
+0.1
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.3
+0.5
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
+0.1
-0.1
+0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.4
+0.6
+0.3
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.7
-0.0
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.4
+0.1
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.7
-0.9
-0.1
-0.0
growth on ypd
YPD
-0.4
+0.1
+0.4
-0.3
-0.0
auxotrophy
YNB Glucose
-0.3
+0.5
-0.0
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
-0.2
-0.0
+0.0
growth on oleic acid
YNB Oleic Acid
-0.8
+0.6
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.6
+0.1
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.2
+0.1
+0.2
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