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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12461 and 12462 are separated by 975 nucleotides
12462 and 12463 are separated by 1358 nucleotides
12463 and 12464 are separated by 396 nucleotides
12464 and 12465 are separated by 714 nucleotides
mRNA_4093: 12461 - Hypothetical Protein, at 1,338,946 to 1,342,318
12461
mRNA_4094: 12462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,343,294 to 1,345,409
12462
mRNA_4095: 12463 - BLAST Valine--tRNA ligase [Rhizoctonia solani], at 1,346,768 to 1,349,335
12463
mRNA_4096: 12464 - BLAST bestrophin domain protein [Rhizoctonia solani AG-3 Rh..., at 1,349,732 to 1,355,090
12464
mRNA_4097: 12465 - KOG1339 Aspartyl protease, at 1,355,805 to 1,357,462
12465
Group
Condition
mRNA
_4093
mRNA
_4094
mRNA
_4095
mRNA
_4096
mRNA
_4097
12461
12462
12463
12464
12465
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.5
-0.2
+0.3
-1.7
growth on ricinoleic acid
YNB Glucose
+0.2
-0.4
-0.2
+0.2
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.0
-0.2
-0.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.5
-0.0
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
-0.9
-0.1
-0.0
-0.6
auxotrophy
YNB Glucose
+0.5
-0.0
-0.2
-0.1
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.3
-0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.3
-0.3
+0.3
-1.5
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.1
-0.1
-0.1
-1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
-0.0
+0.2
+0.1
+0.0
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.2
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.1
-0.3
+0.0
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
+0.0
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.0
+0.0
-0.3
growth on ypd
YPD
+0.1
+0.4
-0.3
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.1
+0.1
-0.2
-0.5
auxotrophy
Dropout Complete
+0.4
+0.1
-0.1
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
+0.2
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.6
+0.1
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
+0.1
+0.2
+0.0
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