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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12463 and 12464 are separated by 396 nucleotides
12464 and 12465 are separated by 714 nucleotides
12465 and 12466 are separated by 387 nucleotides
12466 and 12467 are separated by 206 nucleotides
mRNA_4095: 12463 - BLAST Valine--tRNA ligase [Rhizoctonia solani], at 1,346,768 to 1,349,335
12463
mRNA_4096: 12464 - BLAST bestrophin domain protein [Rhizoctonia solani AG-3 Rh..., at 1,349,732 to 1,355,090
12464
mRNA_4097: 12465 - KOG1339 Aspartyl protease, at 1,355,805 to 1,357,462
12465
mRNA_4098: 12466 - K19950 SEC9 protein transport protein SEC9, at 1,357,850 to 1,359,153
12466
mRNA_4099: 12467 - HMMPfam-Phenolic acid decarboxylase (PAD)-PF05870,SUPERFAMILY--SSF50814, at 1,359,360 to 1,360,302
12467
Group
Condition
mRNA
_4095
mRNA
_4096
mRNA
_4097
mRNA
_4098
mRNA
_4099
12463
12464
12465
12466
12467
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.3
-1.5
N.D.
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
-1.7
N.D.
-0.5
auxotrophy
YNB Glucose
-0.2
-0.1
-1.0
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
-1.3
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
-1.0
N.D.
-0.0
growth on oleic acid
YNB Glucose
-0.2
-0.0
-0.3
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.0
-0.6
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.3
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.2
-0.5
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
-0.6
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.0
-0.3
N.D.
-0.1
auxotrophy
Dropout Complete
-0.1
-0.0
-0.2
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.0
-0.3
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.1
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
-0.1
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.5
N.D.
+0.3
growth on ypd
YPD
-0.3
-0.0
-0.3
N.D.
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
-0.0
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
+0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.2
N.D.
+0.2
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