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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12465 and 12466 are separated by 387 nucleotides
12466 and 12467 are separated by 206 nucleotides
12467 and 12468 are separated by 344 nucleotides
12468 and 12469 are separated by 53 nucleotides
mRNA_4097: 12465 - KOG1339 Aspartyl protease, at 1,355,805 to 1,357,462
12465
mRNA_4098: 12466 - K19950 SEC9 protein transport protein SEC9, at 1,357,850 to 1,359,153
12466
mRNA_4099: 12467 - HMMPfam-Phenolic acid decarboxylase (PAD)-PF05870,SUPERFAMILY--SSF50814, at 1,359,360 to 1,360,302
12467
mRNA_4100: 12468 - K01253 EPHX1 microsomal epoxide hydrolase, at 1,360,647 to 1,362,471
12468
mRNA_4101: 12469 - Hypothetical Protein, at 1,362,525 to 1,362,683
12469
Group
Condition
mRNA
_4097
mRNA
_4098
mRNA
_4099
mRNA
_4100
mRNA
_4101
12465
12466
12467
12468
12469
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.5
N.D.
-0.7
-0.1
+0.5
auxotrophy
YNB Glucose
-1.0
N.D.
-0.2
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-1.0
N.D.
-0.0
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
N.D.
+0.3
-0.0
-0.9
auxotrophy
YNB Glucose 75mM Arginine
-0.6
N.D.
+0.0
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.7
N.D.
-0.5
+0.2
+1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.1
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
N.D.
-0.1
+0.3
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.1
-0.3
-0.0
growth on ricinoleic acid
YNB Glucose
-1.3
N.D.
-0.0
+0.1
+0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.3
-0.6
+0.5
auxotrophy
Dropout Complete
-0.2
N.D.
-0.0
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
-0.2
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
+0.1
+0.3
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
+0.3
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
-0.2
-0.2
+0.6
growth on oleic acid
YNB Glucose
-0.3
N.D.
-0.4
+0.1
+0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
+0.2
-0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
+0.3
+0.0
+0.7
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.0
+0.1
+1.1
growth on ypd
YPD
-0.3
N.D.
+0.7
-0.3
+1.5
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