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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12467 and 12468 are separated by 344 nucleotides
12468 and 12469 are separated by 53 nucleotides
12469 and 12470 are separated by 111 nucleotides
12470 and 12471 are separated by 240 nucleotides
mRNA_4099: 12467 - HMMPfam-Phenolic acid decarboxylase (PAD)-PF05870,SUPERFAMILY--SSF50814, at 1,359,360 to 1,360,302
12467
mRNA_4100: 12468 - K01253 EPHX1 microsomal epoxide hydrolase, at 1,360,647 to 1,362,471
12468
mRNA_4101: 12469 - Hypothetical Protein, at 1,362,525 to 1,362,683
12469
mRNA_4102: 12470 - K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain, at 1,362,795 to 1,364,929
12470
mRNA_4103: 12471 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 1,365,170 to 1,366,480
12471
Group
Condition
mRNA
_4099
mRNA
_4100
mRNA
_4101
mRNA
_4102
mRNA
_4103
12467
12468
12469
12470
12471
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.0
-0.9
N.D.
N.D.
auxotrophy
YNB Glucose
-0.2
-0.0
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.1
+0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.2
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
-0.6
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
-0.4
N.D.
N.D.
auxotrophy
Dropout Complete
-0.0
-0.1
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
+0.6
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.6
+0.5
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.4
+0.1
+0.7
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.2
+1.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
+0.9
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.0
+0.7
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
+1.1
N.D.
N.D.
growth on ypd
YPD
+0.7
-0.3
+1.5
N.D.
N.D.
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