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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12475 and 12476 are separated by 141 nucleotides
12476 and 12477 are separated by 418 nucleotides
12477 and 12478 are separated by 496 nucleotides
12478 and 12479 are separated by 419 nucleotides
mRNA_4107: 12475 - K00621 GNPNAT1, GNA1 glucosamine-phosphate N-acetyltransferase, at 1,372,568 to 1,373,212
12475
mRNA_4108: 12476 - HMMPfam-Aminotransferase class IV-PF01063,SUPERFAMILY--SSF56752, at 1,373,354 to 1,374,334
12476
mRNA_4109: 12477 - Hypothetical Protein, at 1,374,753 to 1,375,099
12477
mRNA_4110: 12478 - BLAST metal resistance protein ycf1 [Trichosporon asahii va..., at 1,375,596 to 1,376,142
12478
mRNA_4111: 12479 - K20296 ANG2, VPS51 vacuolar protein sorting-associated protein 51, at 1,376,562 to 1,377,671
12479
Group
Condition
mRNA
_4107
mRNA
_4108
mRNA
_4109
mRNA
_4110
mRNA
_4111
12475
12476
12477
12478
12479
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
+0.0
-3.0
-0.8
growth on ypd
YPD
N.D.
-0.8
-0.4
-1.5
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.8
-1.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.8
-1.0
-1.8
+0.1
auxotrophy
Dropout Complete
N.D.
-0.1
-0.0
-1.6
+0.3
auxotrophy
YNB Glucose
N.D.
+0.1
-0.5
-1.0
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.6
-0.6
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.2
-0.7
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.2
-1.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.6
-0.4
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
-1.3
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.6
-0.7
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.3
-0.3
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
-0.2
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
-0.0
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.1
-0.6
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+1.2
-0.3
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
+0.8
+0.1
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.5
+1.2
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
+0.7
+0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
+1.3
+1.4
-0.2
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