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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12478 and 12479 are separated by 419 nucleotides
12479 and 12480 are separated by 371 nucleotides
12480 and 12481 are separated by 686 nucleotides
12481 and 12482 are separated by 1005 nucleotides
mRNA_4110: 12478 - BLAST metal resistance protein ycf1 [Trichosporon asahii va..., at 1,375,596 to 1,376,142
12478
mRNA_4111: 12479 - K20296 ANG2, VPS51 vacuolar protein sorting-associated protein 51, at 1,376,562 to 1,377,671
12479
mRNA_4112: 12480 - HMMPfam-Mannosyltransferase putative-PF11051,SUPERFAMILY--SSF53448, at 1,378,043 to 1,379,698
12480
mRNA_4113: 12481 - K02993 RP-S7e, RPS7 small subunit ribosomal protein S7e, at 1,380,385 to 1,381,859
12481
mRNA_4114: 12482 - HMMPfam-NADH-ubiquinone reductase complex 1 MLRQ subunit-PF06522, at 1,382,865 to 1,383,586
12482
Group
Condition
mRNA
_4110
mRNA
_4111
mRNA
_4112
mRNA
_4113
mRNA
_4114
12478
12479
12480
12481
12482
facs on lipid accumulation
Sorted Low BODIPY Gate
-3.0
-0.8
+0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.8
+0.1
-0.0
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-0.1
-0.4
N.D.
-0.3
growth on ypd
YPD
-1.5
+0.2
-0.2
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
-1.4
+0.0
+0.2
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
+0.3
-0.6
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.6
-0.4
-0.0
N.D.
-0.1
auxotrophy
YNB Glucose
-1.0
+0.1
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.4
-0.7
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-0.7
N.D.
-0.3
auxotrophy
Dropout Complete
-1.6
+0.3
+0.4
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.5
-0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.1
-0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.6
+0.4
-0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
-0.3
+0.0
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.3
+0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
-0.1
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.4
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
+0.0
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+1.4
-0.2
-0.0
N.D.
-0.2
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