Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12478 and 12479 are separated by 419 nucleotides12479 and 12480 are separated by 371 nucleotides12480 and 12481 are separated by 686 nucleotides12481 and 12482 are separated by 1005 nucleotides mRNA_4110: 12478 - BLAST metal resistance protein ycf1 [Trichosporon asahii va..., at 1,375,596 to 1,376,142 12478 mRNA_4111: 12479 - K20296 ANG2, VPS51 vacuolar protein sorting-associated protein 51, at 1,376,562 to 1,377,671 12479 mRNA_4112: 12480 - HMMPfam-Mannosyltransferase putative-PF11051,SUPERFAMILY--SSF53448, at 1,378,043 to 1,379,698 12480 mRNA_4113: 12481 - K02993 RP-S7e, RPS7 small subunit ribosomal protein S7e, at 1,380,385 to 1,381,859 12481 mRNA_4114: 12482 - HMMPfam-NADH-ubiquinone reductase complex 1 MLRQ subunit-PF06522, at 1,382,865 to 1,383,586 12482
Group Condition mRNA_4110 mRNA_4111 mRNA_4112 mRNA_4113 mRNA_4114
12478 12479 12480 12481 12482
facs on lipid accumulation Sorted Low BODIPY Gate -3.0 -0.8 +0.2 N.D. -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -1.8 +0.1 -0.0 N.D. -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.7 -0.1 -0.4 N.D. -0.3
growth on ypd YPD -1.5 +0.2 -0.2 N.D. +0.0
growth on oleic acid YNB Oleic Acid -1.4 +0.0 +0.2 N.D. -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -1.0 +0.3 -0.6 N.D. -0.1
growth on oleic acid YNB Glucose -0.6 -0.4 -0.0 N.D. -0.1
auxotrophy YNB Glucose -1.0 +0.1 +0.1 N.D. -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 +0.4 -0.7 N.D. -0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.1 +0.1 -0.7 N.D. -0.3
auxotrophy Dropout Complete -1.6 +0.3 +0.4 N.D. +0.1
ypd buoyancy 40 hrs High Buoyancy -0.3 -0.5 -0.2 N.D. +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.4 +0.1 -0.2 N.D. -0.1
auxotrophy YNB Glucose 75mM Arginine -0.6 +0.4 -0.2 N.D. -0.0
growth on ricinoleic acid YNB Glucose -0.3 +0.0 -0.1 N.D. +0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 -0.3 +0.2 N.D. -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 +0.4 -0.1 N.D. -0.4
auxotrophy YNB Glucose 75mM Methionine -0.4 +0.4 +0.1 N.D. +0.1
ypd buoyancy 40 hrs Low Buoyancy +0.3 +0.1 +0.0 N.D. -0.0
ypd buoyancy 40 hrs Median Buoyancy +0.3 +0.1 +0.2 N.D. +0.2
ypd buoyancy 40 hrs No Buoyancy Separation +1.4 -0.2 -0.0 N.D. -0.2
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