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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12480 and 12481 are separated by 686 nucleotides
12481 and 12482 are separated by 1005 nucleotides
12482 and 12483 are separated by 293 nucleotides
12483 and 12484 are separated by 186 nucleotides
mRNA_4112: 12480 - HMMPfam-Mannosyltransferase putative-PF11051,SUPERFAMILY--SSF53448, at 1,378,043 to 1,379,698
12480
mRNA_4113: 12481 - K02993 RP-S7e, RPS7 small subunit ribosomal protein S7e, at 1,380,385 to 1,381,859
12481
mRNA_4114: 12482 - HMMPfam-NADH-ubiquinone reductase complex 1 MLRQ subunit-PF06522, at 1,382,865 to 1,383,586
12482
mRNA_4115: 12483 - BLAST Nuclear receptor corepressor 2 [Rhizoctonia solani], at 1,383,880 to 1,387,227
12483
mRNA_4116: 12484 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,387,414 to 1,388,698
12484
Group
Condition
mRNA
_4112
mRNA
_4113
mRNA
_4114
mRNA
_4115
mRNA
_4116
12480
12481
12482
12483
12484
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
N.D.
-0.1
-0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
N.D.
-0.3
+0.1
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.2
+0.1
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
-0.4
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
N.D.
-0.1
+0.0
+0.0
growth on oleic acid
YNB Glucose
-0.0
N.D.
-0.1
-0.1
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
N.D.
-0.3
-0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
-0.0
+0.0
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.0
-0.0
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
-0.2
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.2
+0.0
-0.6
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.3
-0.2
-0.3
growth on ypd
YPD
-0.2
N.D.
+0.0
+0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-0.0
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.1
-0.1
-0.2
auxotrophy
YNB Glucose
+0.1
N.D.
-0.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
-0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-0.1
+0.0
+0.3
auxotrophy
Dropout Complete
+0.4
N.D.
+0.1
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.2
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.1
-0.1
+0.6
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