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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12483 and 12484 are separated by 186 nucleotides
12484 and 12485 are separated by 282 nucleotides
12485 and 12486 are separated by 193 nucleotides
12486 and 12487 are separated by 788 nucleotides
mRNA_4115: 12483 - BLAST Nuclear receptor corepressor 2 [Rhizoctonia solani], at 1,383,880 to 1,387,227
12483
mRNA_4116: 12484 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,387,414 to 1,388,698
12484
mRNA_4117: 12485 - K15728 LPIN phosphatidate phosphatase LPIN, at 1,388,981 to 1,392,980
12485
mRNA_4118: 12486 - Hypothetical Protein, at 1,393,174 to 1,394,335
12486
mRNA_4119: 12487 - KOG0118 FOG RRM domain, at 1,395,124 to 1,396,771
12487
Group
Condition
mRNA
_4115
mRNA
_4116
mRNA
_4117
mRNA
_4118
mRNA
_4119
12483
12484
12485
12486
12487
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
N.D.
-0.1
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.1
N.D.
+0.9
-0.8
growth on ypd
YPD
+0.1
-0.3
N.D.
-0.0
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.6
N.D.
+0.4
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.6
N.D.
-0.1
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.6
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.6
N.D.
+0.2
-0.3
auxotrophy
YNB Glucose
-0.1
-0.2
N.D.
-0.1
-0.1
auxotrophy
Dropout Complete
-0.2
-0.2
N.D.
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.7
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.0
N.D.
+0.5
-0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.4
N.D.
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.3
N.D.
+0.4
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.3
N.D.
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
+0.6
N.D.
-0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
N.D.
+0.5
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.2
N.D.
+0.6
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.3
N.D.
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.3
N.D.
+0.6
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
N.D.
+1.1
+0.3
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