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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12484 and 12485 are separated by 282 nucleotides
12485 and 12486 are separated by 193 nucleotides
12486 and 12487 are separated by 788 nucleotides
12487 and 12488 are separated by 1855 nucleotides
mRNA_4116: 12484 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,387,414 to 1,388,698
12484
mRNA_4117: 12485 - K15728 LPIN phosphatidate phosphatase LPIN, at 1,388,981 to 1,392,980
12485
mRNA_4118: 12486 - Hypothetical Protein, at 1,393,174 to 1,394,335
12486
mRNA_4119: 12487 - KOG0118 FOG RRM domain, at 1,395,124 to 1,396,771
12487
mRNA_4120: 12488 - Hypothetical Protein, at 1,398,627 to 1,399,035
12488
Group
Condition
mRNA
_4116
mRNA
_4117
mRNA
_4118
mRNA
_4119
mRNA
_4120
12484
12485
12486
12487
12488
ypd buoyancy
40 hrs Low Buoyancy
-0.6
N.D.
-0.1
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
N.D.
+0.9
-0.8
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
N.D.
+0.4
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.1
-0.7
+0.2
growth on ypd
YPD
-0.3
N.D.
-0.0
-0.7
+0.2
growth on oleic acid
YNB Glucose
-0.6
N.D.
+0.2
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.6
N.D.
+0.2
-0.3
+0.0
auxotrophy
YNB Glucose
-0.2
N.D.
-0.1
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
+0.0
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
+0.5
-0.8
+0.0
auxotrophy
Dropout Complete
-0.2
N.D.
+0.0
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
N.D.
+0.3
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.4
N.D.
+0.3
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.6
N.D.
-0.2
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
+0.2
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
+0.4
-0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
+0.5
+0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+0.6
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
+0.6
-0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
+0.4
-0.4
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
+1.1
+0.3
-0.5
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