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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12486 and 12487 are separated by 788 nucleotides
12487 and 12488 are separated by 1855 nucleotides
12488 and 12489 are separated by 180 nucleotides
12489 and 12490 are separated by 222 nucleotides
mRNA_4118: 12486 - Hypothetical Protein, at 1,393,174 to 1,394,335
12486
mRNA_4119: 12487 - KOG0118 FOG RRM domain, at 1,395,124 to 1,396,771
12487
mRNA_4120: 12488 - Hypothetical Protein, at 1,398,627 to 1,399,035
12488
mRNA_4121: 12489 - KOG3195 Uncharacterized membrane protein NPD008/CGI-148, at 1,399,216 to 1,400,320
12489
mRNA_4122: 12490 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 1,400,543 to 1,402,480
12490
Group
Condition
mRNA
_4118
mRNA
_4119
mRNA
_4120
mRNA
_4121
mRNA
_4122
12486
12487
12488
12489
12490
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.7
+0.2
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.4
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.8
+0.0
-0.2
N.D.
growth on ypd
YPD
-0.0
-0.7
+0.2
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.2
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.3
+0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.5
-0.1
-0.1
N.D.
auxotrophy
Dropout Complete
+0.0
-0.1
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.3
-0.6
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.2
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
+0.1
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose
-0.1
-0.1
+0.1
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.3
-0.1
-0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.4
+0.6
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
-0.8
-0.0
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.1
+0.3
-0.5
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.4
+0.2
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.1
-0.0
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.1
+0.3
+0.7
N.D.
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