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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12487 and 12488 are separated by 1855 nucleotides
12488 and 12489 are separated by 180 nucleotides
12489 and 12490 are separated by 222 nucleotides
12490 and 12491 are separated by 285 nucleotides
mRNA_4119: 12487 - KOG0118 FOG RRM domain, at 1,395,124 to 1,396,771
12487
mRNA_4120: 12488 - Hypothetical Protein, at 1,398,627 to 1,399,035
12488
mRNA_4121: 12489 - KOG3195 Uncharacterized membrane protein NPD008/CGI-148, at 1,399,216 to 1,400,320
12489
mRNA_4122: 12490 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 1,400,543 to 1,402,480
12490
mRNA_4123: 12491 - KOG4510 Permease of the drug/metabolite transporter (DMT) superfamily, at 1,402,766 to 1,404,670
12491
Group
Condition
mRNA
_4119
mRNA
_4120
mRNA
_4121
mRNA
_4122
mRNA
_4123
12487
12488
12489
12490
12491
auxotrophy
YNB Glucose 75mM Methionine
-0.7
+0.2
-0.0
N.D.
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
-0.2
N.D.
-0.5
growth on oleic acid
YNB Glucose
-0.2
-0.1
-0.2
N.D.
-0.4
growth on ypd
YPD
-0.7
+0.2
+0.1
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
+0.0
-0.2
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
-0.6
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.1
-0.1
N.D.
+0.4
auxotrophy
Dropout Complete
-0.1
+0.1
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
+0.5
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
+0.2
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.1
-0.5
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
+0.1
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.0
+0.4
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.5
-0.4
N.D.
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.6
-0.3
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
+0.2
N.D.
-0.0
auxotrophy
YNB Glucose
-0.1
+0.1
+0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.2
+0.3
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.3
+0.7
N.D.
-0.5
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