Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 12488 and 12489 are separated by 180 nucleotides12489 and 12490 are separated by 222 nucleotides12490 and 12491 are separated by 285 nucleotides12491 and 12492 are separated by 885 nucleotides mRNA_4120: 12488 - Hypothetical Protein, at 1,398,627 to 1,399,035 12488 mRNA_4121: 12489 - KOG3195 Uncharacterized membrane protein NPD008/CGI-148, at 1,399,216 to 1,400,320 12489 mRNA_4122: 12490 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 1,400,543 to 1,402,480 12490 mRNA_4123: 12491 - KOG4510 Permease of the drug/metabolite transporter (DMT) superfamily, at 1,402,766 to 1,404,670 12491 mRNA_4124: 12492 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 1,405,556 to 1,407,296 12492
Group Condition mRNA_4120 mRNA_4121 mRNA_4122 mRNA_4123 mRNA_4124
12488 12489 12490 12491 12492
growth on oleic acid YNB Glucose -0.1 -0.2 N.D. -0.4 -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.3 -0.6 N.D. -0.1 -0.0
ypd buoyancy 40 hrs High Buoyancy +0.0 -0.2 N.D. -0.5 +0.2
auxotrophy YNB Glucose 75mM Methionine +0.2 -0.0 N.D. -0.5 -0.1
growth on oleic acid YNB Oleic Acid -0.1 +0.1 N.D. -0.1 -0.3
auxotrophy YNB Glucose 75mM Arginine +0.1 -0.2 N.D. -0.1 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.5 N.D. +0.1 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 -0.4 N.D. +0.6 +0.0
growth on ypd YPD +0.2 +0.1 N.D. -0.6 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.0 +0.2 N.D. -0.0 -0.3
ypd buoyancy 40 hrs Low Buoyancy -0.2 +0.5 N.D. -0.3 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.1 N.D. -0.0 +0.0
auxotrophy Dropout Complete +0.1 -0.1 N.D. -0.2 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.1 N.D. +0.4 -0.2
growth on ricinoleic acid YNB Glucose -0.1 +0.2 N.D. +0.2 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.3 +0.7 N.D. -0.5 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 -0.2 N.D. +0.3 +0.3
facs on lipid accumulation Sorted High BODIPY Gate +0.6 -0.3 N.D. +0.3 -0.3
auxotrophy YNB Glucose +0.1 +0.3 N.D. +0.0 +0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 +0.3 N.D. +0.3 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.0 +0.4 N.D. +0.4 +0.1
remove
mRNA_4120
plot
remove
mRNA_4121
plot
remove
mRNA_4122
remove
mRNA_4123
plot
remove
mRNA_4124
plot