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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12489 and 12490 are separated by 222 nucleotides
12490 and 12491 are separated by 285 nucleotides
12491 and 12492 are separated by 885 nucleotides
12492 and 12493 are separated by 471 nucleotides
mRNA_4121: 12489 - KOG3195 Uncharacterized membrane protein NPD008/CGI-148, at 1,399,216 to 1,400,320
12489
mRNA_4122: 12490 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 1,400,543 to 1,402,480
12490
mRNA_4123: 12491 - KOG4510 Permease of the drug/metabolite transporter (DMT) superfamily, at 1,402,766 to 1,404,670
12491
mRNA_4124: 12492 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 1,405,556 to 1,407,296
12492
mRNA_4125: 12493 - KOG0627 Heat shock transcription factor, at 1,407,768 to 1,409,382
12493
Group
Condition
mRNA
_4121
mRNA
_4122
mRNA
_4123
mRNA
_4124
mRNA
_4125
12489
12490
12491
12492
12493
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
N.D.
-0.5
-0.2
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
N.D.
-0.1
-0.0
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.1
-0.3
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.0
-0.3
-0.7
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.4
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
-0.5
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.1
-0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.5
N.D.
-0.3
-0.1
-0.6
growth on ypd
YPD
+0.1
N.D.
-0.6
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
+0.3
-0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.5
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.4
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
N.D.
+0.1
+0.1
+0.2
auxotrophy
Dropout Complete
-0.1
N.D.
-0.2
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
+0.2
-0.1
-0.3
auxotrophy
YNB Glucose
+0.3
N.D.
+0.0
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.3
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
+0.6
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
+0.3
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
N.D.
+0.4
+0.1
-0.1
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