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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12491 and 12492 are separated by 885 nucleotides
12492 and 12493 are separated by 471 nucleotides
12493 and 12494 are separated by 911 nucleotides
12494 and 12495 are separated by 660 nucleotides
mRNA_4123: 12491 - KOG4510 Permease of the drug/metabolite transporter (DMT) superfamily, at 1,402,766 to 1,404,670
12491
mRNA_4124: 12492 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 1,405,556 to 1,407,296
12492
mRNA_4125: 12493 - KOG0627 Heat shock transcription factor, at 1,407,768 to 1,409,382
12493
mRNA_4126: 12494 - K20408 WDR24 WD repeat-containing protein 24, at 1,410,294 to 1,414,666
12494
mRNA_4127: 12495 - K00793 ribE, RIB5 riboflavin synthase, at 1,415,327 to 1,416,353
12495
Group
Condition
mRNA
_4123
mRNA
_4124
mRNA
_4125
mRNA
_4126
mRNA
_4127
12491
12492
12493
12494
12495
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.2
-1.0
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
-0.6
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.3
-0.7
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
-0.6
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
-0.2
-0.2
N.D.
growth on oleic acid
YNB Glucose
-0.4
-0.1
-0.1
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.1
-0.1
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.3
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
-0.3
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.3
-0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.2
-0.2
-0.1
N.D.
growth on ypd
YPD
-0.6
+0.1
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.2
+0.3
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
+0.2
-0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
+0.2
+0.0
N.D.
auxotrophy
YNB Glucose
+0.0
+0.3
-0.3
+0.3
N.D.
auxotrophy
Dropout Complete
-0.2
+0.2
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
+0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.0
+0.2
+0.0
N.D.
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