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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12496 and 12497 are separated by 796 nucleotides
12497 and 12498 are separated by 265 nucleotides
12498 and 12499 are separated by 235 nucleotides
12499 and 12500 are separated by 1241 nucleotides
mRNA_4128: 12496 - K02926 RP-L4, MRPL4, rplD large subunit ribosomal protein L4, at 1,416,418 to 1,417,570
12496
mRNA_4129: 12497 - K03949 NDUFA5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5, at 1,418,367 to 1,418,907
12497
mRNA_4130: 12498 - K14812 NGL2 RNA exonuclease NGL2, at 1,419,173 to 1,421,594
12498
mRNA_4131: 12499 - KOG3783 Uncharacterized conserved protein, at 1,421,830 to 1,424,236
12499
mRNA_4132: 12500 - Hypothetical Protein, at 1,425,478 to 1,426,122
12500
Group
Condition
mRNA
_4128
mRNA
_4129
mRNA
_4130
mRNA
_4131
mRNA
_4132
12496
12497
12498
12499
12500
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.3
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.5
N.D.
+0.1
-0.2
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
N.D.
-0.3
+0.2
+0.2
growth on ypd
YPD
+0.2
N.D.
-0.2
-0.2
-0.4
auxotrophy
Dropout Complete
-0.2
N.D.
-0.2
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.2
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
+0.0
-0.5
+0.5
auxotrophy
YNB Glucose
+0.1
N.D.
+0.0
-0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
-0.3
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.1
-0.1
+0.2
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.0
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.0
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.0
-0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
-0.3
+0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
N.D.
-0.3
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.3
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.3
+0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.5
N.D.
-0.0
+0.2
+0.0
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