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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12505 and 12506 are separated by 639 nucleotides
12506 and 12507 are separated by 335 nucleotides
12507 and 12508 are separated by 272 nucleotides
12508 and 12509 are separated by 412 nucleotides
mRNA_4137: 12505 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 1,443,015 to 1,447,458
12505
mRNA_4138: 12506 - HMMPfam-Cytochrome c oxidase subunit VIIa-PF02238, at 1,448,098 to 1,448,646
12506
mRNA_4139: 12507 - K14846 RPF1 ribosome production factor 1, at 1,448,982 to 1,450,816
12507
mRNA_4140: 12508 - HMMPfam-Mitochondrial genome maintenance MGM101-PF06420, at 1,451,089 to 1,452,303
12508
mRNA_4141: 12509 - Hypothetical Protein, at 1,452,716 to 1,454,075
12509
Group
Condition
mRNA
_4137
mRNA
_4138
mRNA
_4139
mRNA
_4140
mRNA
_4141
12505
12506
12507
12508
12509
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-3.9
N.D.
N.D.
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
-1.1
N.D.
N.D.
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
-2.7
N.D.
N.D.
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
-1.8
N.D.
N.D.
-1.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.4
-0.9
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-1.3
N.D.
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.9
-1.7
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-1.2
N.D.
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.5
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose
+0.9
-1.1
N.D.
N.D.
+0.1
growth on ypd
YPD
+0.2
-0.0
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.6
N.D.
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
+1.2
-1.3
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.4
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.8
-0.6
N.D.
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-0.5
N.D.
N.D.
+0.0
growth on oleic acid
YNB Glucose
+0.4
+0.1
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
-0.1
N.D.
N.D.
+0.3
auxotrophy
Dropout Complete
+1.2
-0.3
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+1.4
N.D.
N.D.
-0.1
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