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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12507 and 12508 are separated by 272 nucleotides
12508 and 12509 are separated by 412 nucleotides
12509 and 12510 are separated by 267 nucleotides
12510 and 12511 are separated by 234 nucleotides
mRNA_4139: 12507 - K14846 RPF1 ribosome production factor 1, at 1,448,982 to 1,450,816
12507
mRNA_4140: 12508 - HMMPfam-Mitochondrial genome maintenance MGM101-PF06420, at 1,451,089 to 1,452,303
12508
mRNA_4141: 12509 - Hypothetical Protein, at 1,452,716 to 1,454,075
12509
mRNA_4142: 12510 - Hypothetical Protein, at 1,454,343 to 1,455,986
12510
mRNA_4143: 12511 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,HMMPfam-Acetyltransferase (GNAT) domain-PF13444,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 1,456,221 to 1,457,720
12511
Group
Condition
mRNA
_4139
mRNA
_4140
mRNA
_4141
mRNA
_4142
mRNA
_4143
12507
12508
12509
12510
12511
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-1.3
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.8
-0.0
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.9
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.0
-0.2
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.0
-0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.4
+0.1
-0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.0
-0.1
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.2
-0.0
-0.2
auxotrophy
Dropout Complete
N.D.
N.D.
+0.2
+0.0
-0.6
growth on ypd
YPD
N.D.
N.D.
-0.3
-0.2
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
+0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.4
-0.2
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.0
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.2
+0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.3
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.5
-0.1
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