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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12508 and 12509 are separated by 412 nucleotides
12509 and 12510 are separated by 267 nucleotides
12510 and 12511 are separated by 234 nucleotides
12511 and 12512 are separated by 199 nucleotides
mRNA_4140: 12508 - HMMPfam-Mitochondrial genome maintenance MGM101-PF06420, at 1,451,089 to 1,452,303
12508
mRNA_4141: 12509 - Hypothetical Protein, at 1,452,716 to 1,454,075
12509
mRNA_4142: 12510 - Hypothetical Protein, at 1,454,343 to 1,455,986
12510
mRNA_4143: 12511 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,HMMPfam-Acetyltransferase (GNAT) domain-PF13444,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 1,456,221 to 1,457,720
12511
mRNA_4144: 12512 - K01669 phrB deoxyribodipyrimidine photo-lyase, at 1,457,920 to 1,460,424
12512
Group
Condition
mRNA
_4140
mRNA
_4141
mRNA
_4142
mRNA
_4143
mRNA
_4144
12508
12509
12510
12511
12512
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.3
+0.1
-0.2
-1.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.8
-0.0
-0.5
-1.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
-0.2
-0.4
-1.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.0
-0.2
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.2
-0.4
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
+0.1
-0.2
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.9
-0.2
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
-0.2
-0.7
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
-0.4
-0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
-0.1
-0.4
-0.1
auxotrophy
YNB Glucose
N.D.
+0.1
+0.1
-0.5
-0.3
growth on ypd
YPD
N.D.
-0.3
-0.2
+0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.1
-0.4
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.0
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.3
-0.0
-0.3
auxotrophy
Dropout Complete
N.D.
+0.2
+0.0
-0.6
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.3
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.5
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.5
-0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.1
+0.2
+0.7
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.1
+0.1
+0.6
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