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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12509 and 12510 are separated by 267 nucleotides
12510 and 12511 are separated by 234 nucleotides
12511 and 12512 are separated by 199 nucleotides
12512 and 12513 are separated by 504 nucleotides
mRNA_4141: 12509 - Hypothetical Protein, at 1,452,716 to 1,454,075
12509
mRNA_4142: 12510 - Hypothetical Protein, at 1,454,343 to 1,455,986
12510
mRNA_4143: 12511 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,HMMPfam-Acetyltransferase (GNAT) domain-PF13444,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 1,456,221 to 1,457,720
12511
mRNA_4144: 12512 - K01669 phrB deoxyribodipyrimidine photo-lyase, at 1,457,920 to 1,460,424
12512
mRNA_4145: 12513 - K00641 metX homoserine O-acetyltransferase, at 1,460,929 to 1,462,648
12513
Group
Condition
mRNA
_4141
mRNA
_4142
mRNA
_4143
mRNA
_4144
mRNA
_4145
12509
12510
12511
12512
12513
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.2
-0.7
+0.0
-7.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
-0.0
-0.5
-1.5
-4.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.1
-0.2
-0.7
-5.5
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
-0.2
-0.9
-5.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
-0.4
-0.6
-5.2
growth on oleic acid
YNB Glucose
+0.0
-0.1
-0.4
+0.0
-5.5
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
+0.1
-0.2
-1.5
-3.0
auxotrophy
YNB Glucose
+0.1
+0.1
-0.5
-0.3
-5.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.5
-0.1
-0.2
-5.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
-0.4
-0.4
-3.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.2
+0.0
+0.1
-3.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.5
-0.2
+0.1
-5.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
-0.2
-0.2
-3.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.3
-0.0
-0.3
-2.8
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.2
-0.4
-1.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
-0.4
-0.1
-0.8
growth on ypd
YPD
-0.3
-0.2
+0.1
-0.1
-0.3
auxotrophy
Dropout Complete
+0.2
+0.0
-0.6
+0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.2
+0.7
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.1
+0.6
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.3
-0.3
+0.2
+0.7
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