Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
12510 and 12511 are separated by 234 nucleotides
12511 and 12512 are separated by 199 nucleotides
12512 and 12513 are separated by 504 nucleotides
12513 and 12514 are separated by 896 nucleotides
mRNA_4142: 12510 - Hypothetical Protein, at 1,454,343 to 1,455,986
12510
mRNA_4143: 12511 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,HMMPfam-Acetyltransferase (GNAT) domain-PF13444,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 1,456,221 to 1,457,720
12511
mRNA_4144: 12512 - K01669 phrB deoxyribodipyrimidine photo-lyase, at 1,457,920 to 1,460,424
12512
mRNA_4145: 12513 - K00641 metX homoserine O-acetyltransferase, at 1,460,929 to 1,462,648
12513
mRNA_4146: 12514 - Hypothetical Protein, at 1,463,545 to 1,465,730
12514
Group
Condition
mRNA
_4142
mRNA
_4143
mRNA
_4144
mRNA
_4145
mRNA
_4146
12510
12511
12512
12513
12514
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.7
+0.0
-7.0
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.5
-1.5
-4.2
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
-0.7
-5.5
-0.4
growth on ricinoleic acid
YNB Glucose
-0.0
-0.2
-0.9
-5.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.4
-0.6
-5.2
-0.1
auxotrophy
YNB Glucose
+0.1
-0.5
-0.3
-5.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.1
-0.2
-5.7
-0.1
growth on oleic acid
YNB Glucose
-0.1
-0.4
+0.0
-5.5
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
-1.5
-3.0
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.2
+0.1
-5.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.4
-0.4
-3.5
+0.0
growth on oleic acid
YNB Oleic Acid
+0.0
-0.2
-0.2
-3.9
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.0
+0.1
-3.5
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
-0.3
-2.8
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.4
-1.1
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
-0.1
-0.8
-0.0
auxotrophy
Dropout Complete
+0.0
-0.6
+0.2
-0.4
-0.3
growth on ypd
YPD
-0.2
+0.1
-0.1
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.6
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.7
-0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.3
+0.2
+0.7
+0.1
remove
mRNA_4142
plot
remove
mRNA_4143
plot
remove
mRNA_4144
remove
mRNA_4145
plot
remove
mRNA_4146
plot