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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12511 and 12512 are separated by 199 nucleotides
12512 and 12513 are separated by 504 nucleotides
12513 and 12514 are separated by 896 nucleotides
12514 and 12515 are separated by 443 nucleotides
mRNA_4143: 12511 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,HMMPfam-Acetyltransferase (GNAT) domain-PF13444,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 1,456,221 to 1,457,720
12511
mRNA_4144: 12512 - K01669 phrB deoxyribodipyrimidine photo-lyase, at 1,457,920 to 1,460,424
12512
mRNA_4145: 12513 - K00641 metX homoserine O-acetyltransferase, at 1,460,929 to 1,462,648
12513
mRNA_4146: 12514 - Hypothetical Protein, at 1,463,545 to 1,465,730
12514
mRNA_4147: 12515 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,PRINTS-Adrenodoxin reductase family signature-PR00419,SUPERFAMILY--SSF51905, at 1,466,174 to 1,468,597
12515
Group
Condition
mRNA
_4143
mRNA
_4144
mRNA
_4145
mRNA
_4146
mRNA
_4147
12511
12512
12513
12514
12515
auxotrophy
YNB Glucose 75mM Arginine
-0.7
+0.0
-7.0
-0.4
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.6
-5.2
-0.1
-0.5
growth on ricinoleic acid
YNB Glucose
-0.2
-0.9
-5.4
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.7
-5.5
-0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-1.5
-4.2
-0.7
+0.2
auxotrophy
YNB Glucose
-0.5
-0.3
-5.2
-0.2
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-1.5
-3.0
-0.5
-1.2
growth on oleic acid
YNB Glucose
-0.4
+0.0
-5.5
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
-5.7
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.4
-3.5
+0.0
-1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
-5.0
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
-0.2
-0.2
-3.9
-0.1
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.1
-3.5
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.3
-2.8
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.1
-0.8
-0.0
-0.5
auxotrophy
Dropout Complete
-0.6
+0.2
-0.4
-0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-1.1
-0.0
+0.1
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.2
+0.7
+0.1
-1.4
growth on ypd
YPD
+0.1
-0.1
-0.3
+0.2
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.6
-0.1
+0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.7
-0.2
+0.2
-0.3
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