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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12516 and 12517 are separated by 412 nucleotides
12517 and 12518 are separated by 1939 nucleotides
12518 and 12519 are separated by 219 nucleotides
12519 and 12520 are separated by 453 nucleotides
mRNA_4148: 12516 - K00685 ATE1, ate1 arginine-tRNA-protein transferase, at 1,468,792 to 1,470,729
12516
mRNA_4149: 12517 - Hypothetical Protein, at 1,471,142 to 1,472,834
12517
mRNA_4150: 12518 - K15101 SLC25A2_15, ORNT solute carrier family 25 (mitochondrial ornithine transporter) member 2/15, at 1,474,774 to 1,476,217
12518
mRNA_4151: 12519 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,476,437 to 1,477,857
12519
mRNA_4152: 12520 - K15026 EIF2A translation initiation factor 2A, at 1,478,311 to 1,480,762
12520
Group
Condition
mRNA
_4148
mRNA
_4149
mRNA
_4150
mRNA
_4151
mRNA
_4152
12516
12517
12518
12519
12520
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.6
-0.2
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.5
+0.0
-0.7
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.6
-0.3
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.2
-0.3
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.4
-0.0
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.6
-1.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.5
-0.1
-0.3
N.D.
auxotrophy
YNB Glucose
-0.5
+0.4
+0.0
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.4
-0.4
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.4
+0.1
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.3
+0.5
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.5
-0.4
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
-0.3
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.0
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
-0.0
+0.0
N.D.
auxotrophy
Dropout Complete
-0.4
+0.3
+0.1
+0.0
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.2
-0.3
+0.4
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.4
-0.2
+0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.3
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.8
-0.6
-0.1
N.D.
growth on ypd
YPD
+0.4
+0.3
+0.2
+0.2
N.D.
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